Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CFF01_RS01380 Genome accession   NZ_CP022272
Coordinates   276589..278109 (-) Length   506 a.a.
NCBI ID   WP_088903603.1    Uniprot ID   A0AAC9TVU9
Organism   Shewanella marisflavi strain EP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 271589..283109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFF01_RS01355 (CFF01_01355) - 271917..273014 (+) 1098 WP_088903599.1 branched-chain amino acid aminotransferase -
  CFF01_RS01360 (CFF01_01360) - 273067..273486 (-) 420 WP_033540571.1 hypothetical protein -
  CFF01_RS01365 (CFF01_01365) - 273710..274402 (-) 693 WP_232479485.1 GntR family transcriptional regulator -
  CFF01_RS01370 (CFF01_01370) - 274620..275567 (-) 948 WP_088903601.1 acyltransferase -
  CFF01_RS01375 (CFF01_01375) - 275592..276476 (-) 885 WP_088903602.1 acyltransferase -
  CFF01_RS01380 (CFF01_01380) comM 276589..278109 (-) 1521 WP_088903603.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CFF01_RS01385 (CFF01_01385) - 278435..279766 (+) 1332 WP_088905840.1 hemolysin family protein -
  CFF01_RS01390 (CFF01_01390) - 279763..280596 (-) 834 WP_088903604.1 GGDEF domain-containing protein -
  CFF01_RS01395 (CFF01_01395) - 280781..281584 (-) 804 WP_232479486.1 ABC transporter substrate-binding protein -
  CFF01_RS01400 (CFF01_01400) ilvY 281654..282538 (-) 885 WP_033540565.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55049.80 Da        Isoelectric Point: 7.6141

>NTDB_id=237784 CFF01_RS01380 WP_088903603.1 276589..278109(-) (comM) [Shewanella marisflavi strain EP1]
MAIACVTTRASLGVAAPEVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLSDHEFIGELALSGHIRACPGLLPAIIDARKQDKTLILPLENRDDAELVGYQKSHFAAHL
QGLSEYLHGQGSLPGLSQDLHWIDSTPRAPGKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGQSIPKEQFYQRPFRSPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARASSDQIQRYLSRLSGPFIDRFDLTIEVPRLPQGTLTTSQQ
GEPSQVVAQRVHQARERQLCRAGVLNAELTGTQLTQTAGISQRDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLEQSET
VARHHIAQALGYRAMDRLLNSLKNPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=237784 CFF01_RS01380 WP_088903603.1 276589..278109(-) (comM) [Shewanella marisflavi strain EP1]
ATGGCCATAGCCTGCGTCACCACGCGCGCCAGTTTGGGCGTGGCAGCCCCCGAAGTCACAGTGGAAGTGCACCTCAGCAA
TGGGCTACCCGCCTTCAACTTAGTGGGCCTTCCCGAGACCTCGGTAAAAGAAGCCAAGGAGCGGGTGCGCAGCGCCCTAA
TCAACGCCGGGTTTGAGTTTCCTCAACGCAGAATAACGGTCAATCTGGCGCCAGCCGACCTCCCCAAACAGGGGGGCCGC
TATGATCTGCCCATCGCCATCGGCATACTGGCCGCCTCCAAGCAAGTGCCAGACACCCACTTAAGCGATCACGAATTTAT
CGGTGAACTTGCCTTATCGGGCCATATACGTGCCTGCCCCGGCCTATTGCCGGCGATCATCGATGCGCGCAAACAGGACA
AAACCTTAATACTTCCCCTGGAAAATCGCGACGATGCCGAACTGGTGGGTTATCAGAAAAGCCATTTTGCTGCACACCTA
CAAGGGCTCAGCGAATACCTGCACGGACAAGGCTCACTTCCCGGCCTCAGCCAAGATCTGCACTGGATAGATTCAACTCC
CAGAGCGCCAGGCAAATGCTTAAGCGATGTGATCGGCCAATACCAGGCAAAACGTGCCCTGGAAATCGCCGCTGCAGGCA
ATCACAATCTGTTGTTTCTAGGGCCACCCGGCACGGGGAAAACCATGCTTGCCAGTCGCATGATGCAGTTGCTGCCGCCA
TTGGATTACGACGAAGCGTTAGAAGTTGCCGCCATTCATTCGGTCGCCGGGCAGAGTATCCCTAAAGAGCAATTTTACCA
GCGGCCTTTTCGAAGCCCTCATCACACGAGTTCAGCCATCTCGCTGGTGGGCGGCGGCAGCCATCCTAAACCCGGTGAGA
TCTCCCTGGCCCACAGGGGCGTGCTGTTTCTCGACGAGGTGGCCGAATTTCCCCGTAAGGTACTCGATTGCCTGCGTGAA
CCCATGGAGACGGGTGAAGTGGTGATCTCCCGCGCCGCCGCCAAACTGACCTTCGCCAGCCGTTTTCAGCTGATCGCCGC
CATGAACCCCAGCCCCTGCGGCGACAGTGCAAACGCCAGAGCAAGCAGCGATCAGATACAGCGCTATCTGTCACGACTCT
CCGGCCCCTTTATTGACCGTTTCGATCTCACCATAGAGGTACCACGCCTCCCCCAAGGCACGCTCACCACTAGCCAACAG
GGCGAGCCAAGCCAGGTTGTCGCCCAAAGGGTACATCAAGCCAGGGAGCGTCAACTGTGCCGCGCAGGAGTACTCAACGC
TGAACTCACCGGCACGCAGCTCACACAAACCGCAGGGATCAGTCAAAGGGATCTCGAGTTTCTCGAACAGAGTGTCAATC
AACTGGGGTTATCTGTTCGCAGCTATCACAGGTTGCAACGCGTCGCCCGTACCATAGCGGATCTGGAACAAAGCGAAACT
GTCGCCCGCCACCATATCGCCCAGGCACTTGGCTATCGCGCCATGGATAGACTGCTTAATAGCTTGAAGAATCCCTATTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.974

100

0.573
  comM Haemophilus influenzae Rd KW20

55.882

100

0.563
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Legionella pneumophila str. Paris

47.441

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.441

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.086

98.617

0.425

Multiple sequence alignment