Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFA77_RS05135 Genome accession   NZ_CP022271
Coordinates   997758..998237 (+) Length   159 a.a.
NCBI ID   WP_034814137.1    Uniprot ID   -
Organism   Hyphomonas sp. KY3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 992758..1003237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFA77_RS05125 (CFA77_05145) - 993493..994428 (+) 936 WP_206992526.1 hypothetical protein -
  CFA77_RS05130 (CFA77_05150) uvrA 994441..997515 (-) 3075 WP_206992527.1 excinuclease ABC subunit UvrA -
  CFA77_RS05135 (CFA77_05155) ssb 997758..998237 (+) 480 WP_034814137.1 single-stranded DNA-binding protein Machinery gene
  CFA77_RS05140 (CFA77_05160) blaOXA 998242..999099 (+) 858 WP_206992528.1 OXA-1090 family carbapenem-hydrolyzing class D beta-lactamase -
  CFA77_RS05145 (CFA77_05165) gyrA 999232..1002024 (+) 2793 WP_206992529.1 DNA gyrase subunit A -
  CFA77_RS05150 (CFA77_05170) coaD 1002069..1002566 (+) 498 WP_034814135.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17686.47 Da        Isoelectric Point: 5.3193

>NTDB_id=237779 CFA77_RS05135 WP_034814137.1 997758..998237(+) (ssb) [Hyphomonas sp. KY3]
MAGSVNKVILVGNVGQDPEVRQFQNGGQVASFSLATSETWKDKNTGERKEKTEWHRVSVFSEGLVRVVQNYIKKGSKLYI
EGQLETRKWQDKDGQDRYTTEVVLRGFNSTLTMLDSRNEGGGRSSGNDFGGYQGQAGAPRQMSGPQESFSQDLDDEIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=237779 CFA77_RS05135 WP_034814137.1 997758..998237(+) (ssb) [Hyphomonas sp. KY3]
ATGGCAGGATCAGTGAACAAGGTCATCCTTGTCGGAAATGTTGGACAGGACCCGGAAGTCCGCCAGTTCCAGAATGGCGG
CCAGGTCGCCAGCTTCTCGCTCGCCACGTCCGAGACGTGGAAGGACAAGAATACGGGCGAACGCAAGGAAAAGACCGAAT
GGCATCGCGTTTCGGTTTTCAGCGAAGGCCTTGTCCGCGTTGTCCAGAATTATATCAAAAAGGGCTCCAAGCTCTATATC
GAGGGCCAACTCGAGACCCGCAAATGGCAGGACAAGGATGGCCAGGATCGCTACACGACTGAAGTCGTGCTGCGCGGCTT
CAATTCCACGCTGACCATGCTGGACAGCCGTAATGAAGGCGGTGGCCGGTCGTCCGGCAATGATTTCGGCGGCTATCAGG
GGCAGGCCGGCGCGCCGCGCCAGATGAGCGGTCCGCAGGAAAGTTTCAGCCAGGACCTCGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.566
  ssb Glaesserella parasuis strain SC1401

54.605

95.597

0.522
  ssb Neisseria meningitidis MC58

37.989

100

0.428
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.428

Multiple sequence alignment