Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CEW83_RS17205 Genome accession   NZ_CP022187
Coordinates   3769792..3771291 (+) Length   499 a.a.
NCBI ID   WP_108950435.1    Uniprot ID   A0A2U8GUP3
Organism   Parazoarcus communis strain TSPY31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3764792..3776291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEW83_RS17175 (CEW83_17160) thrH 3764925..3765536 (+) 612 WP_108950429.1 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH -
  CEW83_RS17180 (CEW83_17165) purU 3765557..3766432 (+) 876 WP_108950430.1 formyltetrahydrofolate deformylase -
  CEW83_RS17185 (CEW83_17170) - 3766581..3767963 (-) 1383 WP_108950431.1 ammonium transporter -
  CEW83_RS17190 (CEW83_17175) glnK 3767977..3768315 (-) 339 WP_108950432.1 P-II family nitrogen regulator -
  CEW83_RS17195 (CEW83_17180) - 3768392..3769156 (-) 765 WP_108950433.1 TorF family putative porin -
  CEW83_RS17200 (CEW83_17185) - 3769446..3769703 (+) 258 WP_108950434.1 accessory factor UbiK family protein -
  CEW83_RS17205 (CEW83_17190) comM 3769792..3771291 (+) 1500 WP_108950435.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CEW83_RS17210 (CEW83_17195) atzF 3771329..3773149 (-) 1821 WP_108950436.1 allophanate hydrolase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52556.17 Da        Isoelectric Point: 8.1484

>NTDB_id=237473 CEW83_RS17205 WP_108950435.1 3769792..3771291(+) (comM) [Parazoarcus communis strain TSPY31]
MSIALVRTRAVDGLNAPEVTVEVHLSNGLPAFTLVGLADTEVREARDRVRAAIITSQFEFPQRRITVNLAPADLPKEGGR
FDLPIALGILVASGQVKGAGLDAHEFCGELSLDGSLRGIRGALAAALAAGRHQRALVLPLENADEAALARGVNVLPATSL
LAVCAHLNGLASLSAHPPPAVGDGFALAPDLADVRGQFQARRVLEVAAAGGHSLLMYGSPGTGKSMLAQRLPGLMPPLTE
AEALESAAVHSLTGRFDAANWGRRTFRAPHHSASAAALVGGGAIPQPGEVSLAHHGVLFLDELPEFDRRVLESLREPLET
GHVTVSRARRRAEFPARFQLVAAMNPCPCGYSGHPTRACTCTPTQISRYRARLSGPLLDRIDLVVEVPAVSYEDLAEASR
GESSAAVRARVLRARALQVERQGMPNAALAPAQVDACCVPDAAGAALLAQAMSRLNLSARAYHRVLRVARTLADLNEVAQ
PGAAHMAEAIQYRRGLASH

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=237473 CEW83_RS17205 WP_108950435.1 3769792..3771291(+) (comM) [Parazoarcus communis strain TSPY31]
ATGTCGATCGCGCTCGTGCGCACCCGCGCCGTTGACGGGCTCAATGCGCCCGAAGTCACGGTCGAAGTGCACCTTTCGAA
TGGATTGCCCGCGTTTACACTTGTCGGCCTGGCCGACACCGAAGTGCGCGAGGCCCGCGACAGGGTGCGTGCGGCCATCA
TCACCTCCCAGTTCGAGTTCCCACAGCGACGGATCACGGTAAACCTCGCGCCGGCCGACCTTCCAAAGGAGGGCGGACGT
TTCGATCTGCCGATTGCGCTCGGCATTCTGGTCGCGTCGGGGCAGGTCAAGGGCGCCGGACTGGATGCGCACGAATTCTG
TGGCGAGCTCTCGCTCGATGGCAGTCTGCGCGGAATTCGCGGGGCGCTTGCAGCCGCGCTGGCGGCCGGACGCCACCAGC
GCGCGCTGGTGCTGCCGCTCGAGAATGCCGACGAGGCGGCGCTGGCGCGCGGTGTCAATGTGCTGCCCGCCACATCCCTG
CTGGCCGTGTGCGCGCATCTGAACGGGCTCGCGTCCTTGTCTGCCCATCCGCCCCCTGCCGTGGGCGACGGTTTCGCGCT
TGCGCCCGATCTGGCTGATGTCAGGGGGCAGTTCCAGGCTCGCAGGGTGTTGGAAGTCGCTGCTGCCGGCGGGCATTCGC
TGCTCATGTATGGTTCGCCCGGTACCGGCAAGTCGATGCTGGCACAGCGCCTGCCCGGGTTGATGCCGCCACTGACCGAA
GCCGAGGCGCTCGAGAGTGCAGCCGTGCATTCACTCACCGGCCGGTTCGACGCCGCCAACTGGGGGCGGCGCACCTTTCG
CGCCCCGCACCACTCGGCGTCGGCTGCGGCACTGGTGGGCGGCGGTGCGATCCCGCAACCGGGCGAGGTGTCCCTGGCCC
ATCACGGTGTGCTGTTTCTCGACGAACTGCCCGAGTTCGACCGCAGGGTGCTGGAGTCGCTGCGCGAGCCGCTTGAAACC
GGTCATGTCACGGTCTCGCGCGCGCGCCGGCGGGCCGAGTTTCCCGCACGCTTCCAGCTCGTCGCAGCAATGAACCCCTG
CCCCTGCGGCTATTCGGGTCATCCGACCCGGGCGTGCACGTGCACGCCGACGCAGATCTCCCGCTACCGTGCGCGCCTTT
CCGGTCCGCTGCTCGATCGTATCGATCTGGTGGTCGAGGTGCCGGCGGTGTCCTACGAGGACCTTGCCGAGGCCTCCCGC
GGCGAGTCGAGTGCAGCTGTCCGCGCCCGGGTGCTTCGGGCGCGAGCGTTGCAGGTCGAGCGTCAGGGCATGCCGAACGC
CGCGCTCGCGCCGGCGCAGGTGGACGCCTGCTGCGTGCCTGACGCGGCGGGGGCGGCCTTGCTGGCACAGGCCATGAGCC
GCCTCAATCTGTCGGCGCGCGCCTATCACCGGGTGCTGCGGGTTGCGCGCACGCTCGCCGACCTGAATGAAGTCGCACAG
CCCGGCGCCGCGCACATGGCAGAAGCCATTCAGTACCGGCGGGGGCTGGCTTCGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8GUP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.242

99.399

0.549
  comM Vibrio campbellii strain DS40M4

53.831

99.399

0.535
  comM Haemophilus influenzae Rd KW20

52.8

100

0.529
  comM Legionella pneumophila str. Paris

50.499

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.499

100

0.507
  comM Glaesserella parasuis strain SC1401

50.4

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.556

99.399

0.443

Multiple sequence alignment