Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UN84_RS03885 Genome accession   NZ_CP022134
Coordinates   851040..851669 (+) Length   209 a.a.
NCBI ID   WP_046077804.1    Uniprot ID   -
Organism   Halomonas sp. HG01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 846040..856669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UN84_RS03875 uvrA 846462..849320 (-) 2859 WP_046077806.1 excinuclease ABC subunit UvrA -
  UN84_RS03880 - 849482..850855 (+) 1374 WP_046077805.1 MFS transporter -
  UN84_RS03885 ssb 851040..851669 (+) 630 WP_046077804.1 single-stranded DNA-binding protein Machinery gene
  UN84_RS03890 - 851813..853381 (+) 1569 WP_202020709.1 phospholipase D family protein -
  UN84_RS03895 - 853704..854597 (+) 894 WP_035596401.1 sugar nucleotide-binding protein -
  UN84_RS03900 - 854594..855361 (+) 768 WP_046077801.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22440.37 Da        Isoelectric Point: 5.2520

>NTDB_id=237144 UN84_RS03885 WP_046077804.1 851040..851669(+) (ssb) [Halomonas sp. HG01]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKTAEIAQQYLRKGSKVYVE
GRLQTRKWQDQNGQDKYSTEIVANDMQMLDSRGGEMGGGQPRQQGGNYGQPQGGQQQGGGFGGPQQGGNYGQPQGGQPQQ
GGGFGGQQQGGQRPAPQPAPNQGGGQQQGGNFGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=237144 UN84_RS03885 WP_046077804.1 851040..851669(+) (ssb) [Halomonas sp. HG01]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGCAACCTCGGACAAGATCCCGAGGTGCGCTTCACCCCGTCCGGCAC
CGCCGTGGCCAACCTCAACCTCGCCACCACCGATACCTGGATGGATCGCCAGAGCGGCCAGCGTCAGGAACGCACCGAGT
GGCACCGGGTGGTGATGTTCAACAAGACCGCCGAGATCGCCCAGCAGTACCTGCGCAAGGGCAGCAAGGTCTACGTCGAG
GGCCGCCTGCAGACGCGCAAGTGGCAGGACCAGAACGGCCAGGACAAGTACTCCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGATTCGCGTGGCGGCGAGATGGGCGGCGGCCAGCCCCGTCAGCAGGGCGGCAACTACGGCCAGCCCCAGGGCG
GTCAGCAGCAGGGCGGTGGCTTCGGCGGCCCGCAGCAGGGTGGCAACTACGGTCAGCCTCAGGGCGGTCAGCCCCAGCAG
GGCGGCGGCTTCGGCGGGCAGCAGCAGGGCGGTCAGCGTCCCGCTCCTCAGCCGGCGCCCAACCAGGGCGGCGGTCAGCA
GCAGGGCGGCAACTTCGGCGCCCCGGATCCGGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.585

100

0.493
  ssb Glaesserella parasuis strain SC1401

47.596

99.522

0.474
  ssb Neisseria meningitidis MC58

44.175

98.565

0.435
  ssb Neisseria gonorrhoeae MS11

42.995

99.043

0.426

Multiple sequence alignment