Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   MS_RS08005 Genome accession   NC_006300
Coordinates   1740448..1740798 (-) Length   116 a.a.
NCBI ID   WP_041639938.1    Uniprot ID   -
Organism   [Mannheimia] succiniciproducens MBEL55E     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735448..1745798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS_RS07985 (MS1743) serA 1736367..1737599 (-) 1233 WP_011200909.1 phosphoglycerate dehydrogenase -
  MS_RS07990 (MS1744) rpiA 1737622..1738281 (-) 660 WP_011200910.1 ribose-5-phosphate isomerase RpiA -
  MS_RS07995 (MS1746) hemW 1738538..1739695 (-) 1158 WP_011200912.1 radical SAM family heme chaperone HemW -
  MS_RS08000 (MS1747) rdgB 1739707..1740306 (-) 600 WP_011200913.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  MS_RS08005 (MS1748) comE1/comEA 1740448..1740798 (-) 351 WP_041639938.1 ComEA family DNA-binding protein Machinery gene
  MS_RS08010 (MS1749) ispH 1740984..1741928 (-) 945 WP_011200915.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MS_RS08015 (MS1750) lspA 1741925..1742419 (-) 495 WP_041639940.1 signal peptidase II -
  MS_RS08020 (MS1751) ileS 1742509..1745313 (-) 2805 WP_041639942.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12341.16 Da        Isoelectric Point: 9.0114

>NTDB_id=23669 MS_RS08005 WP_041639938.1 1740448..1740798(-) (comE1/comEA) [[Mannheimia] succiniciproducens MBEL55E]
MKLSVRKFLLSCLAAGSLLSAGTAFAADKVPASAETQAIKTSETAKPADNIGNTVNINTATAEEIKQTLIGIGAKKAEAI
IQYREKHGNFTNVEQLLEIQGIGEATLDKNKDRIKL

Nucleotide


Download         Length: 351 bp        

>NTDB_id=23669 MS_RS08005 WP_041639938.1 1740448..1740798(-) (comE1/comEA) [[Mannheimia] succiniciproducens MBEL55E]
ATGAAATTATCAGTAAGAAAATTTTTGCTTAGTTGCTTAGCCGCCGGTTCGTTATTATCTGCCGGAACTGCATTCGCAGC
TGATAAAGTGCCGGCTTCTGCAGAAACTCAAGCAATAAAAACTTCCGAAACCGCCAAGCCCGCAGATAATATTGGCAATA
CGGTGAATATTAATACGGCAACGGCAGAGGAAATTAAGCAAACTTTAATCGGCATTGGCGCAAAAAAAGCGGAAGCTATT
ATTCAATACCGTGAAAAGCATGGTAATTTTACCAACGTAGAACAATTATTGGAAATACAGGGAATAGGAGAGGCGACTTT
GGATAAAAATAAAGATCGGATAAAATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50.45

95.69

0.483
  comEA/comE1 Glaesserella parasuis strain SC1401

54.167

82.759

0.448
  comEA Vibrio cholerae C6706

43.75

96.552

0.422
  comEA Vibrio cholerae strain A1552

43.75

96.552

0.422
  comEA Acinetobacter baylyi ADP1

35.433

100

0.388

Multiple sequence alignment