Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MS_RS01645 Genome accession   NC_006300
Coordinates   333990..335207 (-) Length   405 a.a.
NCBI ID   WP_041639504.1    Uniprot ID   -
Organism   [Mannheimia] succiniciproducens MBEL55E     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328990..340207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS_RS01615 (MS0352) raiA 329751..330071 (-) 321 WP_011199534.1 ribosome-associated translation inhibitor RaiA -
  MS_RS01620 (MS0353) - 330320..331711 (-) 1392 WP_011199535.1 alanine/glycine:cation symporter family protein -
  MS_RS01625 (MS0357) - 332121..332393 (-) 273 WP_011199539.1 GNAT family N-acetyltransferase -
  MS_RS01630 (MS0358) yacG 332410..332628 (-) 219 WP_011199540.1 DNA gyrase inhibitor YacG -
  MS_RS01635 (MS0359) coaE 332606..333250 (-) 645 WP_011199541.1 dephospho-CoA kinase -
  MS_RS01640 (MS0360) - 333277..333993 (-) 717 WP_011199542.1 prepilin peptidase -
  MS_RS01645 (MS0361) pilC 333990..335207 (-) 1218 WP_041639504.1 type II secretion system F family protein Machinery gene
  MS_RS01650 (MS0363) pilB 335204..336604 (-) 1401 WP_041639505.1 GspE/PulE family protein Machinery gene
  MS_RS01655 (MS0364) pilA 336618..337070 (-) 453 WP_011199546.1 prepilin peptidase-dependent pilin Machinery gene
  MS_RS01660 (MS0365) ampD 337174..337746 (+) 573 WP_011199547.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MS_RS01665 (MS0366) - 337884..338354 (+) 471 WP_011199548.1 surface-adhesin E family protein -
  MS_RS01670 (MS0367) era 338429..339382 (-) 954 WP_011199549.1 GTPase Era -
  MS_RS01675 (MS0368) rnc 339379..340053 (-) 675 WP_011199550.1 ribonuclease III -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 46521.06 Da        Isoelectric Point: 9.5995

>NTDB_id=23659 MS_RS01645 WP_041639504.1 333990..335207(-) (pilC) [[Mannheimia] succiniciproducens MBEL55E]
MTLKRYRWKALNRLKQTQSGFILAESDIQAKQNLLARNLYEIKLQQDWQLRYKVSNAEICDVLNQLATLLDAQIPLKESL
HILIQNCSSIPLNQWLRNLLSQLERGFAFSKSIELQGLYLSAQELQLIKVGEMSGKLSYVCSQIAHFRQQQLALQRKIQK
ILLYPLVVLVISATLTLLLLIFIVPQFAEMYQDNNQDLPFITKFLLVLSHSLTHYIWYIIGVATLTFIFIKKQWRHSIWL
YKCAQQLMALMPLISTIKQQARLINFCRSLQLMLNAGIPLQQGLQAFLPQIKTWQNTGALPGDLILVEEVQAILHWIKQG
YGFSNSVGSRLFPQQAQQILQVGESSGQLSNILQKIADDYQQQLDHKIDLLSQLLEPFLMLLIGIIIGVIMLGMYLPIFN
MGNIM

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=23659 MS_RS01645 WP_041639504.1 333990..335207(-) (pilC) [[Mannheimia] succiniciproducens MBEL55E]
ATGACATTAAAACGCTATCGCTGGAAAGCTCTCAATCGGCTAAAACAAACCCAATCAGGCTTTATTCTGGCGGAATCGGA
CATTCAGGCAAAACAAAACCTGCTGGCGCGAAATTTATATGAAATCAAGCTGCAACAAGATTGGCAACTTAGGTACAAAG
TAAGCAATGCAGAAATTTGTGATGTGCTGAACCAACTGGCGACATTATTGGATGCTCAAATCCCCTTAAAAGAAAGCCTG
CATATTCTTATCCAAAATTGCAGTTCGATTCCGTTGAATCAATGGCTGCGCAATTTATTATCGCAATTGGAACGCGGCTT
TGCTTTTTCCAAGTCCATTGAACTGCAAGGATTATATCTCTCAGCCCAAGAGTTACAGTTGATTAAAGTAGGTGAAATGA
GCGGAAAACTAAGTTATGTTTGCAGCCAAATTGCTCATTTTCGCCAACAGCAATTGGCATTACAACGCAAAATACAAAAA
ATTCTGCTTTACCCTTTGGTGGTGCTTGTTATATCTGCGACGCTAACATTATTGCTATTAATATTTATCGTACCTCAATT
TGCCGAAATGTATCAGGATAACAACCAAGATCTCCCGTTCATCACTAAATTTTTGTTAGTTTTATCGCACAGTTTAACTC
ATTATATTTGGTATATAATCGGTGTCGCCACATTAACTTTTATATTTATCAAAAAACAGTGGCGTCATTCAATATGGTTA
TATAAATGCGCCCAACAACTCATGGCATTAATGCCGCTCATAAGTACCATTAAACAGCAGGCAAGGCTGATTAATTTCTG
TCGCAGCCTGCAATTAATGTTAAACGCAGGTATTCCGCTACAACAAGGATTGCAGGCTTTTCTGCCGCAGATCAAAACAT
GGCAAAACACCGGCGCTTTGCCCGGTGATCTTATCTTAGTTGAAGAAGTTCAAGCTATTTTACATTGGATAAAGCAAGGT
TACGGCTTTTCTAACAGCGTAGGAAGCCGTCTGTTTCCTCAACAGGCACAACAAATTTTGCAGGTGGGTGAAAGTTCCGG
TCAACTAAGCAACATTCTGCAAAAAATTGCCGACGATTATCAGCAACAACTTGATCACAAAATCGATTTGCTTTCCCAAT
TGCTCGAACCTTTTCTAATGCTGCTCATCGGCATTATCATTGGTGTAATTATGCTCGGAATGTATCTTCCTATTTTTAAT
ATGGGGAATATAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

53.056

100

0.536
  pilC Haemophilus influenzae 86-028NP

52.567

100

0.531
  pilC Glaesserella parasuis strain SC1401

39.152

99.012

0.388

Multiple sequence alignment