Detailed information NTG0236403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6998_RS15850
• Genome accession: NZ_CP027587
• Coordinates: 2905359..2906351 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-4974
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2900359..2911351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6998_RS15825	ygbN	2901014..2902378 (+)	1365	WP_000104429.1	GntP family transporter	-
C6998_RS15830	-	2902418..2902654 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6998_RS29595	-	2902665..2903240 (-)	576	WP_349665047.1	phenolic acid decarboxylase subunit C	-
C6998_RS29600	-	2903226..2904091 (-)	866	Protein_2926	UbiD family decarboxylase domain-containing protein	-
C6998_RS15840	-	2904091..2904684 (-)	594	WP_000767732.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6998_RS15845	-	2904831..2905238 (+)	408	WP_001208074.1	MarR family transcriptional regulator	-
C6998_RS15850	rpoS	2905359..2906351 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6998_RS15855	nlpD	2906414..2907508 (-)	1095	WP_306308431.1	murein hydrolase activator NlpD	-
C6998_RS15860	pcm	2907693..2908319 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6998_RS15865	surE	2908313..2909074 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6998_RS15870	truD	2909055..2910104 (-)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
C6998_RS15875	ispF	2910101..2910580 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6998_RS15880	ispD	2910580..2911290 (-)	711	WP_000246140.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=236403 C6998_RS15850 WP_000081550.1 2905359..2906351(-) (rpoS) [Escherichia coli strain 2013C-4974]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=236403 C6998_RS15850 WP_000081550.1 2905359..2906351(-) (rpoS) [Escherichia coli strain 2013C-4974]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715