Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C7A04_RS05880 Genome accession   NZ_CP027586
Coordinates   1073878..1074393 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 2012EL-2448     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068878..1079393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A04_RS05855 ygaZ 1069277..1070014 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C7A04_RS05860 ygaH 1070004..1070339 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C7A04_RS05865 emrR 1070430..1070960 (+) 531 WP_106913379.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C7A04_RS05870 emrA 1071087..1072259 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C7A04_RS05875 emrB 1072276..1073814 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C7A04_RS05880 luxS 1073878..1074393 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  C7A04_RS05885 gshA 1074543..1076099 (-) 1557 WP_000611800.1 glutamate--cysteine ligase -
  C7A04_RS05890 yqaA 1076172..1076600 (-) 429 WP_001287457.1 YqaA family protein -
  C7A04_RS05895 yqaB 1076597..1077163 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C7A04_RS05925 csrA 1078621..1078806 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=236306 C7A04_RS05880 WP_001130210.1 1073878..1074393(-) (luxS) [Escherichia coli strain 2012EL-2448]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=236306 C7A04_RS05880 WP_001130210.1 1073878..1074393(-) (luxS) [Escherichia coli strain 2012EL-2448]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment