Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C6Y56_RS25930 Genome accession   NZ_CP027561
Coordinates   5670995..5671639 (+) Length   214 a.a.
NCBI ID   WP_169432146.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5665995..5676639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS25900 (C6Y56_26180) - 5666270..5667220 (+) 951 WP_169432144.1 DUF805 domain-containing protein -
  C6Y56_RS25905 (C6Y56_26185) - 5667282..5668070 (+) 789 WP_169432145.1 SDR family oxidoreductase -
  C6Y56_RS25910 (C6Y56_26190) - 5668151..5668489 (+) 339 WP_003228789.1 histidine triad nucleotide-binding protein -
  C6Y56_RS25915 (C6Y56_26195) coq7 5668596..5669243 (+) 648 WP_007956317.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  C6Y56_RS25920 (C6Y56_26200) speD 5669305..5670099 (-) 795 WP_007956315.1 adenosylmethionine decarboxylase -
  C6Y56_RS25925 (C6Y56_26205) - 5670337..5670759 (-) 423 WP_003228794.1 OsmC family protein -
  C6Y56_RS25930 (C6Y56_26210) crp 5670995..5671639 (+) 645 WP_169432146.1 cAMP-activated global transcriptional regulator CRP Regulator
  C6Y56_RS25935 (C6Y56_26215) - 5671650..5672348 (-) 699 WP_169432147.1 lipoate--protein ligase family protein -
  C6Y56_RS25940 (C6Y56_26220) trpC 5672484..5673320 (-) 837 WP_119427656.1 indole-3-glycerol phosphate synthase TrpC -
  C6Y56_RS25945 (C6Y56_26225) trpD 5673317..5674366 (-) 1050 WP_169432148.1 anthranilate phosphoribosyltransferase -
  C6Y56_RS25950 (C6Y56_26230) - 5674376..5674969 (-) 594 WP_025113531.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24223.02 Da        Isoelectric Point: 7.9510

>NTDB_id=235866 C6Y56_RS25930 WP_169432146.1 5670995..5671639(+) (crp) [Pseudomonas fluorescens strain G7]
MVGITPTPKIKNLDKLLMHCQRRRHAAKSNIICAGDRSDTLYFIIRGSVTILIEDDDGREMIIAYLNAGDFFGELGLFEQ
AGQEQERSAWVRAKVECEVAEISYTKFRELSQQDPDILYVLSGQIAQRLRNTTRKVGDLAFFDVTGRVARCLLELCKQPD
AMTHPDGMQIKVTRQEIGRIVGCSREMVGRVLKDLEERNLVDVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=235866 C6Y56_RS25930 WP_169432146.1 5670995..5671639(+) (crp) [Pseudomonas fluorescens strain G7]
ATGGTTGGTATTACCCCCACACCCAAAATCAAGAACCTCGACAAGCTGCTGATGCATTGCCAGCGCCGGCGTCATGCGGC
CAAGAGCAACATCATCTGCGCCGGGGACCGCTCGGACACGCTGTACTTCATCATCCGCGGTTCAGTCACGATCCTGATCG
AGGATGATGACGGCCGCGAAATGATCATTGCGTATCTGAATGCCGGGGACTTCTTCGGTGAACTGGGCCTGTTCGAACAG
GCCGGCCAGGAACAGGAGCGCAGTGCCTGGGTACGGGCCAAGGTCGAGTGCGAAGTCGCAGAAATCAGCTACACCAAATT
CCGTGAGTTATCGCAGCAGGATCCAGACATTCTTTACGTGCTCAGCGGACAAATCGCACAACGCCTGCGCAACACCACGC
GCAAGGTCGGCGATCTGGCGTTCTTCGACGTCACTGGCCGTGTCGCTCGCTGTCTGCTGGAGCTGTGCAAACAGCCTGAC
GCGATGACCCACCCGGACGGTATGCAGATCAAGGTCACCCGCCAGGAGATCGGGCGGATTGTCGGTTGTTCGCGGGAGAT
GGTCGGTCGCGTGCTCAAGGATCTTGAAGAACGCAACCTGGTAGATGTGAAAGGCAAGACCATGGTGGTCTTCGGCACTC
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(170-200)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

64.039

94.86

0.607
  crp Haemophilus influenzae Rd KW20

56.931

94.393

0.537
  crp Acinetobacter baumannii D1279779

51.659

98.598

0.509

Multiple sequence alignment