Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   C6Y56_RS18435 Genome accession   NZ_CP027561
Coordinates   4106297..4106965 (-) Length   222 a.a.
NCBI ID   WP_169431089.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4101297..4111965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS18425 (C6Y56_18665) - 4102801..4104948 (+) 2148 WP_169431087.1 methyl-accepting chemotaxis protein -
  C6Y56_RS18430 (C6Y56_18670) - 4104987..4106300 (-) 1314 WP_169431088.1 ATP-binding protein -
  C6Y56_RS18435 (C6Y56_18675) ciaR 4106297..4106965 (-) 669 WP_169431089.1 response regulator transcription factor Regulator
  C6Y56_RS18440 (C6Y56_18680) - 4106969..4107280 (-) 312 WP_169431090.1 PepSY domain-containing protein -
  C6Y56_RS18445 (C6Y56_18685) - 4107280..4107588 (-) 309 WP_169431091.1 PepSY domain-containing protein -
  C6Y56_RS18450 (C6Y56_18690) - 4107734..4108813 (+) 1080 WP_169431092.1 patatin-like phospholipase family protein -
  C6Y56_RS18455 (C6Y56_18695) queD 4108900..4109256 (+) 357 WP_007955941.1 6-carboxytetrahydropterin synthase QueD -
  C6Y56_RS18460 (C6Y56_18700) - 4109341..4110153 (+) 813 WP_169431093.1 alpha/beta hydrolase -
  C6Y56_RS18465 (C6Y56_18705) codB 4110396..4111667 (+) 1272 WP_169431094.1 cytosine permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24826.28 Da        Isoelectric Point: 6.4109

>NTDB_id=235833 C6Y56_RS18435 WP_169431089.1 4106297..4106965(-) (ciaR) [Pseudomonas fluorescens strain G7]
MRLLLVEDHVPLADELIAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIVLDLGLPGVPGLEVLAQWRASGLATPVLILTA
RDSWAERIEGLKAGADDYLTKPFHPEELHLRIQSLLRRSKGQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLR
YFMLHPEQILSKSHLAEHLYDGETERDSNVLEVHVNHLRRKLGKSVIETRRGQGYLFGGQAS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=235833 C6Y56_RS18435 WP_169431089.1 4106297..4106965(-) (ciaR) [Pseudomonas fluorescens strain G7]
ATGCGTTTGCTTCTGGTGGAAGACCACGTCCCTCTGGCCGATGAACTGATCGCCGGCCTGCAACGCCAGGGTTATGCCGT
GGACTGGCTGGCGGACGGGCGCGACGCGGTCTATCAGGGTCGTAGCGAGCCGTACGACCTGATCGTTCTCGACCTCGGTC
TGCCGGGCGTGCCCGGCCTTGAAGTGCTGGCGCAATGGCGCGCCAGCGGGCTGGCAACGCCGGTGCTGATCCTTACGGCC
CGGGATTCCTGGGCCGAGCGCATCGAAGGCCTGAAGGCCGGCGCCGATGATTACCTGACCAAACCCTTTCACCCGGAAGA
ACTGCACTTGCGCATCCAGTCGCTGCTGCGCCGCTCCAAGGGGCAGGCCAACCAGCCGACGCTCAAGGCGGCAGGGCTGC
ACCTGGACGAGGGCCGACAGTGTGTCGTGCGTGACGGCGCCGATATTCAACTGACCGCCGCCGAGTTCCGCCTGCTGCGC
TATTTCATGCTGCACCCGGAGCAGATCCTTTCCAAAAGCCACCTCGCCGAACACCTCTACGACGGCGAGACCGAACGCGA
TTCCAATGTGCTTGAAGTCCACGTCAACCACCTGCGGCGCAAGCTTGGCAAAAGCGTGATCGAAACCCGGCGCGGCCAGG
GTTATCTGTTCGGCGGGCAGGCTTCGTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-217)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae R6

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae Rx1

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae D39

37.727

99.099

0.374
  ciaR Streptococcus mutans UA159

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae TIGR4

37.727

99.099

0.374
  covR Streptococcus salivarius strain HSISS4

36.161

100

0.365
  micA Streptococcus pneumoniae Cp1015

34.615

100

0.365

Multiple sequence alignment