Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SE071780_RS09690 Genome accession   NZ_CP021972
Coordinates   1964446..1966422 (-) Length   658 a.a.
NCBI ID   WP_042357209.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain ATCC 39506     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959446..1971422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE071780_RS09670 (SE071780_02020) amiF 1959962..1960885 (-) 924 WP_012680088.1 ATP-binding cassette domain-containing protein Regulator
  SE071780_RS09675 (SE071780_02021) amiE 1960878..1961948 (-) 1071 WP_012680089.1 ABC transporter ATP-binding protein Regulator
  SE071780_RS09680 (SE071780_02022) amiD 1961957..1962883 (-) 927 WP_012680090.1 oligopeptide ABC transporter permease OppC Regulator
  SE071780_RS09685 (SE071780_02023) amiC 1962883..1964382 (-) 1500 WP_012680091.1 ABC transporter permease Regulator
  SE071780_RS09690 (SE071780_02024) amiA3 1964446..1966422 (-) 1977 WP_042357209.1 peptide ABC transporter substrate-binding protein Regulator
  SE071780_RS09695 (SE071780_02025) pbp3 1966730..1967968 (+) 1239 WP_012680093.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SE071780_RS09700 (SE071780_02026) pbp3 1968290..1969525 (+) 1236 WP_012680094.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SE071780_RS09705 (SE071780_02027) - 1969609..1970790 (+) 1182 WP_012680095.1 serine hydrolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72806.29 Da        Isoelectric Point: 5.3484

>NTDB_id=235453 SE071780_RS09690 WP_042357209.1 1964446..1966422(-) (amiA3) [Streptococcus equi subsp. equi strain ATCC 39506]
MKKSKWLATLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLSDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVKIGDKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQKDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGTKNDFYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=235453 SE071780_RS09690 WP_042357209.1 1964446..1966422(-) (amiA3) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGAAGAAAAGTAAATGGTTGGCAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACAAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAGCGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCTTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGCAAATCCTCTATCGAGCTTGTCAAAAACGAAAATTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCAGCAGCGAGATTATTCCCAACAACACCTTCTTATAAAACTGTTAAGAAAAAATATGGAGACAGTA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCGTTTAACCTAAATCGTACGTCTTACAACCACACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGAAAATTGGCGACAAAAACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAAAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTCTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATTTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGCGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.667

100

0.568
  amiA3 Streptococcus thermophilus LMD-9

56.515

100

0.567
  amiA Streptococcus salivarius strain HSISS4

56.297

100

0.564

Multiple sequence alignment