Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SE071780_RS09680 Genome accession   NZ_CP021972
Coordinates   1961957..1962883 (-) Length   308 a.a.
NCBI ID   WP_012680090.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain ATCC 39506     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1956957..1967883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE071780_RS09670 (SE071780_02020) amiF 1959962..1960885 (-) 924 WP_012680088.1 ATP-binding cassette domain-containing protein Regulator
  SE071780_RS09675 (SE071780_02021) amiE 1960878..1961948 (-) 1071 WP_012680089.1 ABC transporter ATP-binding protein Regulator
  SE071780_RS09680 (SE071780_02022) amiD 1961957..1962883 (-) 927 WP_012680090.1 oligopeptide ABC transporter permease OppC Regulator
  SE071780_RS09685 (SE071780_02023) amiC 1962883..1964382 (-) 1500 WP_012680091.1 ABC transporter permease Regulator
  SE071780_RS09690 (SE071780_02024) amiA3 1964446..1966422 (-) 1977 WP_042357209.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34559.48 Da        Isoelectric Point: 7.9346

>NTDB_id=235451 SE071780_RS09680 WP_012680090.1 1961957..1962883(-) (amiD) [Streptococcus equi subsp. equi strain ATCC 39506]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGNVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=235451 SE071780_RS09680 WP_012680090.1 1961957..1962883(-) (amiD) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTATTTAGACAATTTTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTGATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTAACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGCGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTACCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75

100

0.75
  amiD Streptococcus thermophilus LMG 18311

74.351

100

0.744
  amiD Streptococcus thermophilus LMD-9

74.351

100

0.744

Multiple sequence alignment