Detailed information NTG0235449

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SE071780_RS09670
• Genome accession: NZ_CP021972
• Coordinates: 1959962..1960885 (-)
• Length: 307 a.a.
• NCBI ID: WP_012680088.1
• Uniprot ID: C0M8B8
• Organism: Streptococcus equi subsp. equi strain ATCC 39506
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1954962..1965885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE071780_RS09670 (SE071780_02020)	amiF	1959962..1960885 (-)	924	WP_012680088.1	ATP-binding cassette domain-containing protein	Regulator
SE071780_RS09675 (SE071780_02021)	amiE	1960878..1961948 (-)	1071	WP_012680089.1	ABC transporter ATP-binding protein	Regulator
SE071780_RS09680 (SE071780_02022)	amiD	1961957..1962883 (-)	927	WP_012680090.1	oligopeptide ABC transporter permease OppC	Regulator
SE071780_RS09685 (SE071780_02023)	amiC	1962883..1964382 (-)	1500	WP_012680091.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34714.94 Da
• Isoelectric Point: 6.9308

>NTDB_id=235449 SE071780_RS09670 WP_012680088.1 1959962..1960885(-) (amiF) [Streptococcus equi subsp. equi strain ATCC 39506]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQSEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQVEAERYRKEL

Nucleotide

• Length: 924 bp

>NTDB_id=235449 SE071780_RS09670 WP_012680088.1 1959962..1960885(-) (amiF) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAGACAAGTTCAGGCGAAATCCGCTATGATGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAGACAGAAGATGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGC
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
CCAAGTCTTGAATCTGTTGAAGAAAATACAGTCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCGGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AACCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCAGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGTGGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

3D structure

• AlphaFold DB: C0M8B8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.007	99.674	0.827
amiF	Streptococcus thermophilus LMD-9	82.68	99.674	0.824
amiF	Streptococcus salivarius strain HSISS4	82.353	99.674	0.821