Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SPS_RS05120 Genome accession   NC_004606
Coordinates   962341..963021 (+) Length   226 a.a.
NCBI ID   WP_011106761.1    Uniprot ID   P0DH29
Organism   Streptococcus pyogenes SSI-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957341..968021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPS_RS05100 (SPs0973) aphA 957767..958498 (+) 732 WP_002984720.1 acid phosphatase AphA -
  SPS_RS05105 (SPs0974) - 958676..960208 (+) 1533 WP_011106760.1 ClC family H(+)/Cl(-) exchange transporter -
  SPS_RS05110 (SPs0975) - 960371..960985 (+) 615 WP_011054476.1 SGNH/GDSL hydrolase family protein -
  SPS_RS05115 (SPs0977) - 961165..962292 (+) 1128 WP_002994399.1 AI-2E family transporter -
  SPS_RS05120 (SPs0978) radC 962341..963021 (+) 681 WP_011106761.1 RadC family protein Machinery gene
  SPS_RS05125 (SPs0979) - 963023..963718 (-) 696 WP_002989835.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SPS_RS05130 (SPs0980) - 963728..964372 (-) 645 WP_002984705.1 redox-sensing transcriptional repressor Rex -
  SPS_RS05135 (SPs0981) - 964624..964971 (-) 348 WP_002989831.1 DUF1831 domain-containing protein -
  SPS_RS05140 (SPs0982) - 964961..966088 (-) 1128 WP_002989829.1 cysteine desulfurase family protein -
  SPS_RS05145 (SPs0983) - 966085..967065 (-) 981 WP_011054478.1 ribose-phosphate diphosphokinase -
  SPS_RS05150 (SPs0984) - 967205..967783 (-) 579 WP_002989824.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25787.00 Da        Isoelectric Point: 7.3866

>NTDB_id=23502 SPS_RS05120 WP_011106761.1 962341..963021(+) (radC) [Streptococcus pyogenes SSI-1]
MYSIKCDDNKVMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDNQNRIFEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=23502 SPS_RS05120 WP_011106761.1 962341..963021(+) (radC) [Streptococcus pyogenes SSI-1]
ATGTATTCTATAAAATGTGATGATAATAAAGTCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATAATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTTTTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(12-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DH29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.08

100

0.571
  radC Streptococcus pneumoniae R6

56.637

100

0.566
  radC Streptococcus pneumoniae D39

56.637

100

0.566
  radC Streptococcus gordonii str. Challis substr. CH1

54.867

100

0.549
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.791

95.133

0.407
  radC Haemophilus influenzae Rd KW20

37.443

96.903

0.363

Multiple sequence alignment