Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YPTB_RS00825 Genome accession   NC_006155
Coordinates   163475..164998 (-) Length   507 a.a.
NCBI ID   WP_011191481.1    Uniprot ID   Q66G49
Organism   Yersinia pseudotuberculosis IP 32953     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 158475..169998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YPTB_RS00805 (YPTB0129) ytfT 159758..160777 (+) 1020 WP_002212022.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  YPTB_RS00810 (YPTB0130) yjfF 160777..161769 (+) 993 WP_002212021.1 galactofuranose ABC transporter, permease protein YjfF -
  YPTB_RS00815 (YPTB0131) hdfR 161756..162637 (-) 882 WP_002212020.1 HTH-type transcriptional regulator HdfR -
  YPTB_RS00820 (YPTB0132) - 162756..163094 (+) 339 WP_002212019.1 DUF413 domain-containing protein -
  YPTB_RS00825 (YPTB0133) comM 163475..164998 (-) 1524 WP_011191481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YPTB_RS22270 ilvL 165382..165480 (+) 99 WP_002231873.1 ilv operon leader peptide -
  YPTB_RS00830 (YPTB0134) ilvG 165622..167268 (+) 1647 WP_011191482.1 acetolactate synthase 2 catalytic subunit -
  YPTB_RS00835 (YPTB0135) ilvM 167265..167522 (+) 258 WP_002212016.1 acetolactate synthase 2 small subunit -
  YPTB_RS00840 (YPTB0136) - 167545..168471 (+) 927 WP_002212015.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54460.98 Da        Isoelectric Point: 7.6013

>NTDB_id=23502 YPTB_RS00825 WP_011191481.1 163475..164998(-) (comM) [Yersinia pseudotuberculosis IP 32953]
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALACSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=23502 YPTB_RS00825 WP_011191481.1 163475..164998(-) (comM) [Yersinia pseudotuberculosis IP 32953]
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCGCCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACCCCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGTCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCTGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q66G49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.803

0.639
  comM Glaesserella parasuis strain SC1401

62.919

100

0.629
  comM Vibrio cholerae strain A1552

62.749

99.014

0.621
  comM Vibrio campbellii strain DS40M4

62.55

99.014

0.619
  comM Legionella pneumophila str. Paris

51.8

98.619

0.511
  comM Legionella pneumophila strain ERS1305867

51.8

98.619

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.401

100

0.446

Multiple sequence alignment