Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M6_RS07865 Genome accession   NC_006086
Coordinates   1567079..1567570 (-) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes MGAS10394     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1543719..1592795 1567079..1567570 within 0


Gene organization within MGE regions


Location: 1543719..1592795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6_RS07735 (M6_Spy1540) prx 1543719..1543901 (-) 183 WP_011184907.1 hypothetical protein Regulator
  M6_RS07740 (M6_Spy1541) - 1544139..1544939 (+) 801 WP_021340119.1 DNA/RNA non-specific endonuclease -
  M6_RS07745 (M6_Spy1542) - 1545001..1545201 (-) 201 WP_003058228.1 CsbD family protein -
  M6_RS07750 (M6_Spy1543) - 1545386..1546357 (-) 972 WP_011888780.1 Abi family protein -
  M6_RS07755 (M6_Spy1544) - 1546648..1547400 (-) 753 WP_011184910.1 CHAP domain-containing protein -
  M6_RS07760 (M6_Spy1545) - 1547522..1547749 (-) 228 WP_000609113.1 phage holin -
  M6_RS07765 (M6_Spy1546) - 1547746..1548018 (-) 273 WP_002986916.1 DUF7365 family protein -
  M6_RS07770 (M6_Spy1547) - 1548028..1548645 (-) 618 WP_011184056.1 DUF1366 domain-containing protein -
  M6_RS07775 (M6_Spy1548) - 1548642..1549079 (-) 438 WP_011106643.1 DUF1617 family protein -
  M6_RS07780 (M6_Spy1549) - 1549091..1551106 (-) 2016 WP_011184911.1 gp58-like family protein -
  M6_RS07785 (M6_Spy1550) hylP 1551119..1552144 (-) 1026 WP_011184912.1 hyaluronidase HylP -
  M6_RS07790 (M6_Spy1551) - 1552141..1554192 (-) 2052 WP_011184913.1 phage tail spike protein -
  M6_RS07795 (M6_Spy1552) - 1554189..1554968 (-) 780 WP_011184914.1 distal tail protein Dit -
  M6_RS07800 (M6_Spy1553) - 1555000..1558635 (-) 3636 WP_011184915.1 tape measure protein -
  M6_RS07805 (M6_Spy1554) - 1558650..1558979 (-) 330 WP_002988428.1 hypothetical protein -
  M6_RS07810 (M6_Spy1555) - 1559021..1559380 (-) 360 WP_011184916.1 tail assembly chaperone -
  M6_RS07815 (M6_Spy1556) - 1559432..1560025 (-) 594 WP_011184917.1 phage major tail protein, TP901-1 family -
  M6_RS07820 (M6_Spy1557) - 1560096..1560281 (-) 186 WP_002988389.1 hypothetical protein -
  M6_RS10465 (M6_Spy1558) - 1560285..1560890 (-) 606 WP_011184918.1 ADP-ribosyltransferase -
  M6_RS10470 (M6_Spy1559) - 1560835..1561848 (-) 1014 WP_011184919.1 phage head morphogenesis protein -
  M6_RS07835 (M6_Spy1560) - 1561829..1563331 (-) 1503 WP_011184920.1 phage portal protein -
  M6_RS07840 (M6_Spy1561) - 1563343..1564110 (-) 768 Protein_1522 PBSX family phage terminase large subunit -
  M6_RS07845 (M6_Spy1562) - 1564282..1564566 (+) 285 Protein_1523 tyrosine-type recombinase/integrase -
  M6_RS07850 (M6_Spy1563) - 1564810..1565754 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  M6_RS07855 (M6_Spy1564) - 1565886..1566542 (+) 657 WP_002983144.1 DUF1129 domain-containing protein -
  M6_RS07860 (M6_Spy1565) rpsR 1566675..1566914 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  M6_RS07865 (M6_Spy1566) ssb 1567079..1567570 (-) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  M6_RS07870 (M6_Spy1567) rpsF 1567592..1567882 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  M6_RS07875 (M6_Spy1568) - 1568055..1568348 (-) 294 WP_002983113.1 hypothetical protein -
  M6_RS07880 (M6_Spy1569) mutY 1568516..1569670 (+) 1155 WP_002988276.1 A/G-specific adenine glycosylase -
  M6_RS07885 (M6_Spy1570) - 1569835..1570359 (+) 525 Protein_1531 helix-turn-helix domain-containing protein -
  M6_RS07890 (M6_Spy1571) trxA 1570411..1570743 (-) 333 WP_001932060.1 thioredoxin -
  M6_RS07895 (M6_Spy1572) - 1570806..1571306 (-) 501 WP_021340636.1 phosphatase PAP2 family protein -
  M6_RS07900 (M6_Spy1573) - 1571310..1573649 (-) 2340 WP_023078038.1 endonuclease MutS2 -
  M6_RS07905 (M6_Spy1574) - 1573798..1574343 (-) 546 WP_011184926.1 CvpA family protein -
  M6_RS07910 (M6_Spy1575) - 1574346..1574654 (-) 309 WP_002993251.1 hypothetical protein -
  M6_RS07915 (M6_Spy1576) rnhC 1574811..1575713 (+) 903 WP_010922635.1 ribonuclease HIII -
  M6_RS07920 (M6_Spy1577) lepB 1575724..1576317 (+) 594 WP_002983074.1 signal peptidase I -
  M6_RS07925 (M6_Spy1578) - 1576375..1578828 (+) 2454 WP_011184928.1 ATP-dependent RecD-like DNA helicase -
  M6_RS07930 (M6_Spy1579) - 1578919..1579401 (+) 483 WP_002983066.1 hypothetical protein -
  M6_RS07935 (M6_Spy1580) dinB 1579494..1580588 (-) 1095 WP_002983063.1 DNA polymerase IV -
  M6_RS07940 (M6_Spy1581) pflB 1580797..1583124 (+) 2328 WP_002988233.1 formate C-acetyltransferase -
  M6_RS07945 (M6_Spy1582) - 1583304..1584254 (-) 951 WP_011018196.1 serine hydrolase domain-containing protein -
  M6_RS07950 (M6_Spy1583) - 1584239..1584991 (-) 753 WP_011184930.1 CppA N-terminal domain-containing protein -
  M6_RS07955 (M6_Spy1584) - 1585289..1586185 (+) 897 WP_002983050.1 sulfite exporter TauE/SafE family protein -
  M6_RS07960 (M6_Spy1585) gla 1586521..1587369 (-) 849 WP_002983047.1 aquaglyceroporin Gla -
  M6_RS07965 (M6_Spy1586) - 1587841..1589037 (-) 1197 WP_002993271.1 MFS transporter -
  M6_RS07970 (M6_Spy1587) - 1589203..1589862 (+) 660 WP_021340637.1 Crp/Fnr family transcriptional regulator -
  M6_RS07975 (M6_Spy1588) - 1589884..1592166 (+) 2283 WP_011184932.1 Xaa-Pro dipeptidyl-peptidase -
  M6_RS07980 (M6_Spy1589) - 1592246..1592467 (-) 222 WP_002988211.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=23469 M6_RS07865 WP_002983122.1 1567079..1567570(-) (ssb) [Streptococcus pyogenes MGAS10394]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=23469 M6_RS07865 WP_002983122.1 1567079..1567570(-) (ssb) [Streptococcus pyogenes MGAS10394]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment