Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VP_RS18350 Genome accession   NC_004605
Coordinates   660973..661908 (+) Length   311 a.a.
NCBI ID   WP_005482134.1    Uniprot ID   Q87IE8
Organism   Vibrio parahaemolyticus RIMD 2210633     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655973..666908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP_RS18325 (VPA0652) - 656510..656983 (-) 474 WP_005483350.1 copper chaperone PCu(A)C -
  VP_RS18330 (VPA0654) - 657074..657535 (-) 462 WP_005485973.1 hypothetical protein -
  VP_RS18335 (VPA0655) - 657915..658958 (+) 1044 WP_005489206.1 hypothetical protein -
  VP_RS18340 (VPA0656) - 659198..659878 (+) 681 WP_005489362.1 Crp/Fnr family transcriptional regulator -
  VP_RS18345 (VPA0657) - 660042..660950 (+) 909 WP_005487329.1 siderophore ABC transporter substrate-binding protein -
  VP_RS18350 (VPA0658) ceuB 660973..661908 (+) 936 WP_005482134.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  VP_RS18355 (VPA0659) vctG 661901..662851 (+) 951 WP_005482136.1 iron chelate uptake ABC transporter permease subunit VctG -
  VP_RS18360 (VPA0660) vctC 662854..663609 (+) 756 WP_005482130.1 iron chelate ABC transporter ATP-binding protein VctC -
  VP_RS18365 (VPA0662) cueR 663657..664043 (-) 387 WP_005486235.1 Cu(I)-responsive transcriptional regulator -
  VP_RS18370 (VPA0663) - 664251..665237 (-) 987 WP_005482132.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33687.37 Da        Isoelectric Point: 8.9164

>NTDB_id=23429 VP_RS18350 WP_005482134.1 660973..661908(+) (ceuB) [Vibrio parahaemolyticus RIMD 2210633]
MKKLLLTLVVLSTVSLFVGVADMTPQQLFSGDAKALELFFTSRIPRLFAILLAGAGLSIAGLVMQQISQNRFAAPSTTGT
IECAMLGYVMSVVFFGDGDHLWLVFGISVLGTLTFVHFIQRIQFKSVVFVPLVGIIFGNVIESMTTFIAYKYDALQSLSA
WSVANFANILRGDFELLYIAVPMVILSYLFAARISAVGIGKDFAVNLGLNYQQVVTIGVLLVSIMSASVVMIVGQLPFLG
LIVPNLVSHFYGDNLKKNIPLTAMYGAILVLGCDLVSRLIIFPHEMPISIVISILGGVVFIAMLLRGKQHA

Nucleotide


Download         Length: 936 bp        

>NTDB_id=23429 VP_RS18350 WP_005482134.1 660973..661908(+) (ceuB) [Vibrio parahaemolyticus RIMD 2210633]
TTGAAAAAGTTATTGCTAACCCTTGTGGTTTTAAGCACGGTTTCGTTGTTTGTTGGGGTGGCTGATATGACGCCCCAACA
ATTGTTTTCAGGCGATGCAAAAGCGTTAGAGCTTTTCTTTACTAGCCGTATTCCTCGTTTGTTCGCGATTTTGCTTGCTG
GGGCAGGGCTTAGTATCGCTGGTCTTGTGATGCAGCAGATCAGCCAAAACCGTTTTGCCGCGCCTTCGACAACGGGAACA
ATTGAGTGTGCCATGTTGGGCTACGTAATGAGCGTGGTGTTCTTTGGCGATGGTGATCATCTTTGGTTGGTGTTTGGTAT
CTCCGTGCTCGGAACGCTTACGTTTGTGCATTTCATCCAACGTATCCAATTCAAAAGTGTGGTGTTTGTACCGCTCGTCG
GGATCATTTTCGGTAACGTTATTGAATCGATGACCACGTTCATCGCCTACAAGTACGATGCGCTCCAAAGCTTGAGTGCT
TGGTCGGTCGCGAACTTCGCCAACATTTTGCGGGGGGATTTTGAACTGCTTTACATTGCGGTTCCGATGGTGATTCTCAG
TTACTTGTTTGCCGCAAGAATCTCTGCGGTCGGTATTGGTAAAGACTTTGCCGTGAACTTGGGTTTGAACTATCAGCAAG
TGGTTACTATTGGCGTGCTGTTGGTGTCCATCATGTCCGCAAGTGTGGTGATGATAGTTGGTCAGCTGCCGTTTCTTGGC
CTTATTGTGCCGAACCTCGTCAGTCATTTTTACGGTGATAACCTGAAGAAGAACATTCCTTTAACCGCCATGTATGGTGC
CATATTGGTTCTCGGCTGTGATTTAGTGAGTCGTTTGATCATCTTCCCTCATGAAATGCCAATTTCCATTGTGATCAGCA
TTTTAGGTGGCGTGGTATTCATTGCGATGTTGCTAAGAGGTAAGCAGCATGCGTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(8-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87IE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

42.994

100

0.434

Multiple sequence alignment