Detailed information NTG0234058

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: BB268_RS01330
• Genome accession: NZ_CP021866
• Coordinates: 216063..216476 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SG-M29
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 211063..221476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BB268_RS01305 (BB268_01305)	-	213316..213681 (+)	366	WP_000285373.1	DUF1033 family protein	-
BB268_RS01315 (BB268_01315)	comYA	213854..214825 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
BB268_RS01320 (BB268_01320)	comYB	214719..215762 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
BB268_RS01325 (BB268_01325)	comGC/cglC	215759..216088 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
BB268_RS01330 (BB268_01330)	comYD	216063..216476 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
BB268_RS01335 (BB268_01335)	comGE	216448..216747 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
BB268_RS01340 (BB268_01340)	comGF	216701..217162 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
BB268_RS01345 (BB268_01345)	comGG	217140..217511 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
BB268_RS01350 (BB268_01350)	comYH	217626..218600 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
BB268_RS01355 (BB268_01355)	-	218632..219825 (+)	1194	WP_000047534.1	acetate kinase	-
BB268_RS01360 (BB268_01360)	-	219977..220183 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
BB268_RS01365 (BB268_01365)	-	220242..220379 (+)	138	WP_001865900.1	hypothetical protein	-
BB268_RS01370 (BB268_01370)	-	220420..220875 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=234058 BB268_RS01330 WP_000244261.1 216063..216476(+) (comYD) [Streptococcus agalactiae strain SG-M29]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=234058 BB268_RS01330 WP_000244261.1 216063..216476(+) (comYD) [Streptococcus agalactiae strain SG-M29]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394