Detailed information NTG0233847

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: BB161_RS01085
• Genome accession: NZ_CP021862
• Coordinates: 180759..181172 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain CUGBS591
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 175759..186172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BB161_RS01060 (BB161_01060)	-	178012..178377 (+)	366	WP_000285373.1	DUF1033 family protein	-
BB161_RS01070 (BB161_01070)	comYA	178550..179521 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
BB161_RS01075 (BB161_01075)	comYB	179415..180458 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
BB161_RS01080 (BB161_01080)	comGC/cglC	180455..180784 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
BB161_RS01085 (BB161_01085)	comYD	180759..181172 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
BB161_RS01090 (BB161_01090)	comGE	181144..181443 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
BB161_RS01095 (BB161_01095)	comGF	181397..181858 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
BB161_RS01100 (BB161_01100)	comGG	181836..182207 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
BB161_RS01105 (BB161_01105)	comYH	182322..183296 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
BB161_RS01110 (BB161_01110)	-	183328..184521 (+)	1194	WP_000047534.1	acetate kinase	-
BB161_RS01115 (BB161_01115)	-	184673..184879 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
BB161_RS12145 (BB161_01120)	-	184947..185075 (+)	129	WP_014959723.1	hypothetical protein	-
BB161_RS01125 (BB161_01125)	-	185116..185571 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=233847 BB161_RS01085 WP_000244261.1 180759..181172(+) (comYD) [Streptococcus agalactiae strain CUGBS591]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=233847 BB161_RS01085 WP_000244261.1 180759..181172(+) (comYD) [Streptococcus agalactiae strain CUGBS591]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394