Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | CCD88_RS10510 | Genome accession | NZ_CP021724 |
| Coordinates | 1871305..1871817 (+) | Length | 170 a.a. |
| NCBI ID | WP_149449396.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain 12-330 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1866305..1876817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCD88_RS10475 (CCD88_10660) | - | 1866784..1867212 (+) | 429 | Protein_1790 | pilin | - |
| CCD88_RS13085 | - | 1867551..1867912 (+) | 362 | Protein_1791 | pilin | - |
| CCD88_RS10485 (CCD88_10670) | - | 1867824..1868830 (-) | 1007 | Protein_1792 | IS5 family transposase | - |
| CCD88_RS13250 (CCD88_10675) | - | 1868894..1869304 (+) | 411 | Protein_1793 | pilin | - |
| CCD88_RS12550 | - | 1869363..1869674 (+) | 312 | Protein_1794 | pilin | - |
| CCD88_RS12555 | - | 1869693..1870064 (+) | 372 | Protein_1795 | pilin | - |
| CCD88_RS10500 (CCD88_10690) | - | 1870262..1870594 (+) | 333 | Protein_1796 | pilin | - |
| CCD88_RS10510 (CCD88_10700) | pilE | 1871305..1871817 (+) | 513 | WP_149449396.1 | pilin | Machinery gene |
| CCD88_RS10520 (CCD88_10710) | lpxC | 1872556..1873479 (+) | 924 | WP_002216134.1 | UDP-3-O-acyl-N-acetylglucosamine deacetylase | - |
| CCD88_RS10535 (CCD88_10720) | gnd | 1874419..1875867 (+) | 1449 | WP_002228813.1 | decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18047.37 Da Isoelectric Point: 7.8433
>NTDB_id=232835 CCD88_RS10510 WP_149449396.1 1871305..1871817(+) (pilE) [Neisseria meningitidis strain 12-330]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGIWPANNSSAGVATSANIK
GKYVQSVEVNNGVVTATMLSSGVNNEIKGKKLSLWAKRQDGSVKWFCGQPVTRDDAKATNDEVTAATGNSNNGINTKHLP
STCRDESTAS
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGIWPANNSSAGVATSANIK
GKYVQSVEVNNGVVTATMLSSGVNNEIKGKKLSLWAKRQDGSVKWFCGQPVTRDDAKATNDEVTAATGNSNNGINTKHLP
STCRDESTAS
Nucleotide
Download Length: 513 bp
>NTDB_id=232835 CCD88_RS10510 WP_149449396.1 1871305..1871817(+) (pilE) [Neisseria meningitidis strain 12-330]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATCCTTTTGGCTGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCATATGGCCCGCCAACAACAGTTCTGCCGGCGTGGCAACCTCCGCCAACATCAAA
GGCAAATATGTTCAAAGCGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAACGAAAT
CAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
ACGACGCCAAAGCCACCAACGACGAAGTCACCGCCGCCACCGGCAACAGCAACAACGGAATCAACACCAAACACCTGCCG
TCAACCTGCCGCGATGAATCAACTGCCAGCTAA
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATCCTTTTGGCTGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCATATGGCCCGCCAACAACAGTTCTGCCGGCGTGGCAACCTCCGCCAACATCAAA
GGCAAATATGTTCAAAGCGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAACGAAAT
CAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
ACGACGCCAAAGCCACCAACGACGAAGTCACCGCCGCCACCGGCAACAGCAACAACGGAATCAACACCAAACACCTGCCG
TCAACCTGCCGCGATGAATCAACTGCCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria gonorrhoeae strain FA1090 |
80 |
100 |
0.8 |
| pilE | Neisseria gonorrhoeae MS11 |
78.698 |
99.412 |
0.782 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.751 |
100 |
0.406 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.955 |
100 |
0.376 |
| comP | Acinetobacter baylyi ADP1 |
37.5 |
98.824 |
0.371 |