Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | B4U42_RS11040 | Genome accession | NZ_CP021644 |
| Coordinates | 2142481..2142945 (-) | Length | 154 a.a. |
| NCBI ID | WP_005711781.1 | Uniprot ID | K4JWE9 |
| Organism | Glaesserella parasuis 29755 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2137481..2147945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4U42_RS11020 (B4U42_10875) | dapE | 2137977..2139110 (-) | 1134 | WP_005711772.1 | succinyl-diaminopimelate desuccinylase | - |
| B4U42_RS11025 (B4U42_10880) | - | 2139194..2139862 (-) | 669 | WP_005711775.1 | prepilin peptidase | - |
| B4U42_RS11030 (B4U42_10885) | pilC | 2139859..2141055 (-) | 1197 | WP_005711777.1 | type II secretion system F family protein | Machinery gene |
| B4U42_RS11035 (B4U42_10890) | pilB | 2141048..2142433 (-) | 1386 | WP_005711779.1 | GspE/PulE family protein | Machinery gene |
| B4U42_RS11040 (B4U42_10895) | pilA | 2142481..2142945 (-) | 465 | WP_005711781.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| B4U42_RS11045 (B4U42_10900) | radA | 2143133..2144509 (+) | 1377 | WP_005711784.1 | DNA repair protein RadA | - |
| B4U42_RS11050 (B4U42_10905) | gmk | 2144562..2145188 (-) | 627 | WP_005711785.1 | guanylate kinase | - |
| B4U42_RS11055 (B4U42_10910) | - | 2145257..2146228 (-) | 972 | WP_005714915.1 | IS110 family transposase | - |
| B4U42_RS11060 (B4U42_10915) | gpt | 2146629..2147108 (-) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16379.04 Da Isoelectric Point: 9.3428
>NTDB_id=232178 B4U42_RS11040 WP_005711781.1 2142481..2142945(-) (pilA) [Glaesserella parasuis 29755]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP
Nucleotide
Download Length: 465 bp
>NTDB_id=232178 B4U42_RS11040 WP_005711781.1 2142481..2142945(-) (pilA) [Glaesserella parasuis 29755]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
55.034 |
96.753 |
0.532 |
| pilA | Haemophilus influenzae 86-028NP |
54.362 |
96.753 |
0.526 |