Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B4U42_RS11030 Genome accession   NZ_CP021644
Coordinates   2139859..2141055 (-) Length   398 a.a.
NCBI ID   WP_005711777.1    Uniprot ID   B8F826
Organism   Glaesserella parasuis 29755     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2134859..2146055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U42_RS12740 - 2135123..2135497 (+) 375 WP_075592870.1 SLC13 family permease -
  B4U42_RS11005 (B4U42_10860) - 2135575..2135964 (-) 390 WP_005711765.1 SufE family protein -
  B4U42_RS11010 (B4U42_10865) clpP 2136065..2136646 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  B4U42_RS11015 (B4U42_10870) clpX 2136653..2137903 (+) 1251 WP_005711769.1 ATP-dependent protease ATP-binding subunit ClpX -
  B4U42_RS11020 (B4U42_10875) dapE 2137977..2139110 (-) 1134 WP_005711772.1 succinyl-diaminopimelate desuccinylase -
  B4U42_RS11025 (B4U42_10880) - 2139194..2139862 (-) 669 WP_005711775.1 prepilin peptidase -
  B4U42_RS11030 (B4U42_10885) pilC 2139859..2141055 (-) 1197 WP_005711777.1 type II secretion system F family protein Machinery gene
  B4U42_RS11035 (B4U42_10890) pilB 2141048..2142433 (-) 1386 WP_005711779.1 GspE/PulE family protein Machinery gene
  B4U42_RS11040 (B4U42_10895) pilA 2142481..2142945 (-) 465 WP_005711781.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  B4U42_RS11045 (B4U42_10900) radA 2143133..2144509 (+) 1377 WP_005711784.1 DNA repair protein RadA -
  B4U42_RS11050 (B4U42_10905) gmk 2144562..2145188 (-) 627 WP_005711785.1 guanylate kinase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45575.38 Da        Isoelectric Point: 10.1129

>NTDB_id=232176 B4U42_RS11030 WP_005711777.1 2139859..2141055(-) (pilC) [Glaesserella parasuis 29755]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLSISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFKKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=232176 B4U42_RS11030 WP_005711777.1 2139859..2141055(-) (pilC) [Glaesserella parasuis 29755]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGGCAAAAGCAGACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAGAAACGGTTGCAACAAAAAGGATACAGCCAGTTAAGCATTAGCCGACATTTTGCCTTGCCGACTG
CACCAAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTAGCCTTATTAATTCAAGCTAAAATCCCCCTAAAACAGAGT
TTAGTGATGTTGCTTGAAACCTGCCAAAATCGCACTTTTTACCGTTGGCAACAAGAAACAATCCGCTTGATTGAAGCCGG
CTTTGCGTTATCCGTTGCCTTTAAAAAACAGGGAAAATATATTAATCCACAAGAAATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTAATTTTAACCAACATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTGCTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGTTCAAAAGGAAAATCACTCCCTCTAATTACCGAAATACTCTTTAGCCTATCCCATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGCTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F826

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

100

100

1
  pilC Haemophilus influenzae 86-028NP

38.155

100

0.384
  pilC Haemophilus influenzae Rd KW20

38.155

100

0.384

Multiple sequence alignment