Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VV1_RS02360 Genome accession   NC_004459
Coordinates   482241..482966 (+) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus CMCP6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477241..487966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS02345 (VV1_0482) clpC 477717..480290 (-) 2574 WP_011078571.1 ATP-dependent chaperone ClpB Regulator
  VV1_RS02350 (VV1_0483) pgeF 480407..481123 (-) 717 WP_011078572.1 peptidoglycan editing factor PgeF -
  VV1_RS02355 (VV1_0484) rluD 481127..482104 (-) 978 WP_011078573.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VV1_RS02360 (VV1_0485) comL 482241..482966 (+) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  VV1_RS02365 (VV1_0486) raiA 483319..483642 (+) 324 WP_011078575.1 ribosome-associated translation inhibitor RaiA -
  VV1_RS02370 (VV1_0487) pheA 483886..485064 (+) 1179 WP_011078576.1 prephenate dehydratase -
  VV1_RS02375 (VV1_0488) yjjX 485089..485625 (+) 537 WP_043920911.1 inosine/xanthosine triphosphatase -
  VV1_RS02380 (VV1_0489) trpR 485656..485964 (-) 309 WP_011078578.1 trp operon repressor -
  VV1_RS02385 (VV1_0490) sltY 485980..487935 (-) 1956 WP_011078579.1 murein transglycosylase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=23216 VV1_RS02360 WP_011078574.1 482241..482966(+) (comL) [Vibrio vulnificus CMCP6]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=23216 VV1_RS02360 WP_011078574.1 482241..482966(+) (comL) [Vibrio vulnificus CMCP6]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAAAAAATGGACTGGGTGCT
GTACATGCGTGGTCTCACCCATATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACTGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment