Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJE04_RS15705 Genome accession   NC_005139
Coordinates   3329185..3330708 (-) Length   507 a.a.
NCBI ID   WP_043877354.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324185..3335708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS15685 (VV3235) - 3325470..3326456 (+) 987 WP_011151430.1 serine/threonine protein kinase -
  BJE04_RS15690 (VV3236) - 3326489..3327094 (+) 606 WP_011151431.1 thiol:disulfide interchange protein DsbA/DsbL -
  BJE04_RS15695 (VV3237) - 3327148..3328029 (-) 882 WP_011151432.1 acyltransferase -
  BJE04_RS15700 (VV3238) - 3328172..3329146 (+) 975 WP_011151433.1 DUF2860 domain-containing protein -
  BJE04_RS15705 (VV3239) comM 3329185..3330708 (-) 1524 WP_043877354.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJE04_RS15710 (VV3240) ilvG 3331178..3332824 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  BJE04_RS15715 (VV3241) ilvM 3332836..3333120 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  BJE04_RS15720 (VV3242) ilvE 3333132..3334070 (+) 939 WP_011151436.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54907.09 Da        Isoelectric Point: 8.7933

>NTDB_id=23161 BJE04_RS15705 WP_043877354.1 3329185..3330708(-) (comM) [Vibrio vulnificus YJ016]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFIGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAYLCGQQALALHQAPQREKPAQHHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGER
GEPTAVVKARVEQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=23161 BJE04_RS15705 WP_043877354.1 3329185..3330708(-) (comM) [Vibrio vulnificus YJ016]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCCGCTGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCCGAGCAGATCTCAGTTCAGTTTCTCCAGCAACATGAATTTAT
CGGTGAGTTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTCCTGCCAGCCGCACTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTGCCTCATGCTAATGGGGATCAAGCCGCCTTGGTTGGCAAGAACATGCATAAGTCGGCGTGCTCACTG
ATTGAAGTTTGTGCTTACTTATGTGGTCAGCAAGCGTTGGCTTTGCATCAGGCGCCTCAGCGAGAAAAACCCGCGCAACA
TCATCGTGATTTACAAGACATCATAGGCCAGCAGCAAGGTAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTAGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGTGCGCCGCATCACTCGAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCACGTCCTGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGTAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGAGCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGAGCAGGCGAGAGAGCGAATGCAGCATCGCAATGGTAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACAGCGTTGCATC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.574

100

0.876
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

64.497

100

0.645
  comM Glaesserella parasuis strain SC1401

62.451

99.803

0.623
  comM Legionella pneumophila str. Paris

50.6

98.619

0.499
  comM Legionella pneumophila strain ERS1305867

50.6

98.619

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment