Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   S101359_RS18790 Genome accession   NZ_CP021500
Coordinates   3790543..3790662 (+) Length   39 a.a.
NCBI ID   WP_061572214.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3785543..3795662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS18770 (S101359_03717) - 3785593..3786966 (-) 1374 WP_088118180.1 YncE family protein -
  S101359_RS18775 (S101359_03718) - 3787006..3788367 (-) 1362 WP_088118181.1 YncE family protein -
  S101359_RS18780 (S101359_03719) - 3788650..3789204 (+) 555 WP_088118182.1 YdhK family protein -
  S101359_RS18785 (S101359_03720) rapF 3789417..3790559 (+) 1143 WP_088118183.1 tetratricopeptide repeat protein Regulator
  S101359_RS18790 (S101359_03721) phrF 3790543..3790662 (+) 120 WP_061572214.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  S101359_RS18795 (S101359_03722) - 3790916..3791395 (+) 480 WP_010790246.1 hypothetical protein -
  S101359_RS18800 (S101359_03723) - 3791545..3792333 (+) 789 WP_088118184.1 hypothetical protein -
  S101359_RS18805 (S101359_03724) - 3792320..3792994 (+) 675 WP_035175329.1 hypothetical protein -
  S101359_RS18810 (S101359_03725) - 3793004..3793801 (+) 798 WP_244205096.1 hypothetical protein -
  S101359_RS18815 (S101359_03726) - 3793804..3794451 (+) 648 WP_088118186.1 ABC transporter ATP-binding protein -
  S101359_RS18820 (S101359_03727) - 3794444..3795001 (+) 558 WP_088118187.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4218.12 Da        Isoelectric Point: 9.4191

>NTDB_id=231328 S101359_RS18790 WP_061572214.1 3790543..3790662(+) (phrF) [Bacillus atrophaeus strain SRCM101359]
MKLKSKILLSCLALSTVFVATSIETAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=231328 S101359_RS18790 WP_061572214.1 3790543..3790662(+) (phrF) [Bacillus atrophaeus strain SRCM101359]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTCAGCACAGTGTTTGTCGCAACGAGTATTGAAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

81.481

69.231

0.564
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436
  comEA Vibrio cholerae C6706

45.714

89.744

0.41
  comEA Vibrio cholerae strain A1552

45.714

89.744

0.41

Multiple sequence alignment