Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | S101359_RS18785 | Genome accession | NZ_CP021500 |
| Coordinates | 3789417..3790559 (+) | Length | 380 a.a. |
| NCBI ID | WP_088118183.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain SRCM101359 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3784417..3795559
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S101359_RS18765 (S101359_03716) | - | 3784885..3785586 (+) | 702 | WP_088118179.1 | bacteriocin biosynthesis protein AlbG | - |
| S101359_RS18770 (S101359_03717) | - | 3785593..3786966 (-) | 1374 | WP_088118180.1 | YncE family protein | - |
| S101359_RS18775 (S101359_03718) | - | 3787006..3788367 (-) | 1362 | WP_088118181.1 | YncE family protein | - |
| S101359_RS18780 (S101359_03719) | - | 3788650..3789204 (+) | 555 | WP_088118182.1 | YdhK family protein | - |
| S101359_RS18785 (S101359_03720) | rapF | 3789417..3790559 (+) | 1143 | WP_088118183.1 | tetratricopeptide repeat protein | Regulator |
| S101359_RS18790 (S101359_03721) | phrF | 3790543..3790662 (+) | 120 | WP_061572214.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | Regulator |
| S101359_RS18795 (S101359_03722) | - | 3790916..3791395 (+) | 480 | WP_010790246.1 | hypothetical protein | - |
| S101359_RS18800 (S101359_03723) | - | 3791545..3792333 (+) | 789 | WP_088118184.1 | hypothetical protein | - |
| S101359_RS18805 (S101359_03724) | - | 3792320..3792994 (+) | 675 | WP_035175329.1 | hypothetical protein | - |
| S101359_RS18810 (S101359_03725) | - | 3793004..3793801 (+) | 798 | WP_244205096.1 | hypothetical protein | - |
| S101359_RS18815 (S101359_03726) | - | 3793804..3794451 (+) | 648 | WP_088118186.1 | ABC transporter ATP-binding protein | - |
| S101359_RS18820 (S101359_03727) | - | 3794444..3795001 (+) | 558 | WP_088118187.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 45584.08 Da Isoelectric Point: 5.2630
>NTDB_id=231327 S101359_RS18785 WP_088118183.1 3789417..3790559(+) (rapF) [Bacillus atrophaeus strain SRCM101359]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQIEEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGVLDYYFNLFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM
DYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDFKQYEDAISHFKKAYTMAESEEQPQLMGRTLYNIGLCKNSQNQYESA
ITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYSSGPDEEAIQ
KFFDFLESKMMYADLEDFALDVAKYYHGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQIEEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGVLDYYFNLFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM
DYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDFKQYEDAISHFKKAYTMAESEEQPQLMGRTLYNIGLCKNSQNQYESA
ITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYSSGPDEEAIQ
KFFDFLESKMMYADLEDFALDVAKYYHGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV
Nucleotide
Download Length: 1143 bp
>NTDB_id=231327 S101359_RS18785 WP_088118183.1 3789417..3790559(+) (rapF) [Bacillus atrophaeus strain SRCM101359]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATAGAAGAAGACCAGGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCAGATTTGCTGCTTGAAATTGATAAAAAACAGGCCCGTTTAACCGGAGTCCTTGATTATTACTTTAATCTCTTCAGGGG
CATGTACGAACTGGATCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTGTAA
AGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCCATG
GACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTTGTT
TGCTACCAATTTCTTAGATTTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAATCCG
AAGAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATTGGGCTTTGCAAAAACAGCCAAAACCAGTATGAGTCAGCA
ATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAATATTCTTCCTTCTCTGCCTCAAGCTTATTTTTTGAT
TACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAGAGG
CCGGAGATATCATTTACTTATCGGAGTTTGAATTTTTGAAATCTTTATACTCATCTGGCCCGGATGAAGAGGCAATTCAG
AAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTATCA
TGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACGAGTAAGGCAGCTTATTCAAGGAGGAGTGA
AGTTGTATGAAATTGAAGTCTAA
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATAGAAGAAGACCAGGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCAGATTTGCTGCTTGAAATTGATAAAAAACAGGCCCGTTTAACCGGAGTCCTTGATTATTACTTTAATCTCTTCAGGGG
CATGTACGAACTGGATCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTGTAA
AGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCCATG
GACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTTGTT
TGCTACCAATTTCTTAGATTTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAATCCG
AAGAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATTGGGCTTTGCAAAAACAGCCAAAACCAGTATGAGTCAGCA
ATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAATATTCTTCCTTCTCTGCCTCAAGCTTATTTTTTGAT
TACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAGAGG
CCGGAGATATCATTTACTTATCGGAGTTTGAATTTTTGAAATCTTTATACTCATCTGGCCCGGATGAAGAGGCAATTCAG
AAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTATCA
TGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACGAGTAAGGCAGCTTATTCAAGGAGGAGTGA
AGTTGTATGAAATTGAAGTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
91.864 |
100 |
0.921 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
56.579 |
100 |
0.566 |