Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CV_RS19825 Genome accession   NC_005085
Coordinates   4327407..4328909 (-) Length   500 a.a.
NCBI ID   WP_011137547.1    Uniprot ID   Q7NQY5
Organism   Chromobacterium violaceum ATCC 12472     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4322407..4333909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV_RS19805 (CV3996) cyoA 4324029..4324970 (-) 942 WP_011137543.1 ubiquinol oxidase subunit II -
  CV_RS19815 (CV3998) - 4325946..4326557 (-) 612 WP_011137545.1 thiol:disulfide interchange protein DsbA/DsbL -
  CV_RS19820 (CV3999) - 4326589..4327341 (-) 753 WP_011137546.1 SPOR domain-containing protein -
  CV_RS19825 (CV4000) comM 4327407..4328909 (-) 1503 WP_011137547.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CV_RS19830 (CV4001) - 4328915..4329202 (-) 288 WP_011137548.1 accessory factor UbiK family protein -
  CV_RS19835 (CV4002) glnK 4329510..4329848 (+) 339 WP_011137549.1 P-II family nitrogen regulator -
  CV_RS19840 (CV4003) - 4329876..4331186 (+) 1311 WP_011137550.1 ammonium transporter -
  CV_RS19845 (CV4004) - 4331302..4331730 (-) 429 WP_011137551.1 ClpXP protease specificity-enhancing factor -
  CV_RS19850 (CV4005) - 4331740..4332342 (-) 603 WP_011137552.1 glutathione S-transferase N-terminal domain-containing protein -
  CV_RS19855 (CV4006) - 4332494..4333258 (-) 765 WP_011137553.1 cytochrome c1 -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52735.40 Da        Isoelectric Point: 7.3128

>NTDB_id=23074 CV_RS19825 WP_011137547.1 4327407..4328909(-) (comM) [Chromobacterium violaceum ATCC 12472]
MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGR
FDLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVRGALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVESL
PQACAFLNGLQPLEPFAGAIGGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSET
EALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
GMIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAA
GEASESVRHRVLTARDRQLARQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAET
INRNHVLQAIQLRRVMQSGA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=23074 CV_RS19825 WP_011137547.1 4327407..4328909(-) (comM) [Chromobacterium violaceum ATCC 12472]
ATGACGCTGGCGGTGGTGGCGAGCAGGGCGTTGTCCGGGCTTGACGCCCCGGAGGTGGCCGTCGAGGTCCACCTGGCCAA
CGGCCTGCCCGCGTTCAACATCGTCGGCCTGCCCGACACCGAGGTGAAGGAAAGCCGGGACCGCGTCCGCGCCGCCATTC
TCACCTCGGGCTTCGAATTTCCCGCCCGCAAGATCACCGTCAATCTCGCTCCGGCCGACCTGCCCAAGGACTCCGGCCGC
TTCGACCTCCCCATCGCCATTGGCATCCTGCTGGCTTCGGGCCAGGTGAAGAACGACGACATCGCCCGTTTCGAATTCGC
CGGCGAGCTGGCGCTCAGCGGCGCGGTGCGCCCGGTGCGCGGCGCCTTGGCGATGGCCTGCCAGTGCCACGCCGCCGGTC
GCGCTTTCGTGCTGCCTGCCGACAGCGCCGGCGAGGCGGCGGTGGTCGGCGGCGCCGCCGTCTACGCGGTGGAGTCCTTG
CCGCAGGCGTGCGCCTTTCTGAACGGTTTGCAGCCGCTGGAACCGTTCGCCGGCGCCATCGGCGGCGAGTGGCCGAACTA
TCCCGATCTGGCCGATGTCAAAGGCCAGTCCATCGCCCGCGGGGCTTTGGAAATCGCCGCGGCAGGCGGACACAGCTTGT
TGCTGATGGGGCCGCCGGGCACCGGCAAGTCCATGCTGGCGGCCAGGCTGCCCGGCCTGCTGCCGCCGTTGTCCGAAACA
GAGGCGCTGGAGAGCGCGGCGGTGCAGTCGCTGGGTTCGCAAGGCTTCCAGCCCGGCCGCTGGCGGGTGCGCCCGTTCAG
GTCGCCCCATCACACCGCTTCCGCGGTGGCGCTGGTCGGCGGCGGCAGTGAGCCGAGGCCGGGCGAGATCAGCCTGGCGC
ATCACGGCGTGCTGTTTCTCGACGAATTGCCGGAGTTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAGCCGCTCGAGAGC
GGGATGATCCATATTTCGCGGGCGGCGAGGCAGGCCAGCTTCCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGCTACCACGGCCATCCGTCCGGGCGCTGTCAGTGCACTCCCGAGCAGGTGGCGAGATATCGAGGTAAAATCT
CCGGCCCTTTGCTGGACCGCATCGATTTGCAGGTGGAAGTGCCGGCGCTGACCGCGGACGAGCTGCAGCGGTCCGCTGCG
GGGGAGGCCAGCGAGTCGGTGCGCCATCGGGTGCTGACGGCGCGCGATCGCCAGTTGGCGCGGCAGGGCGGGCTGAATGC
GGCATTGCAGGGCGCGGAGCTGGAGCGGCATTGCCTCGGCGACGAGCAGGCGCTGGCGGTGCTGGCCAAGGCATTGCAAC
AACTTGGCTTGTCGGCGCGCGCGTATCATCGGATACTGCGGGTTTCGCGCACCATCGCCGATTTGCAGGGCGCGGAAACG
ATAAACCGCAACCATGTATTGCAGGCGATCCAGCTCAGGCGCGTCATGCAGAGCGGCGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NQY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.333

99

0.528
  comM Haemophilus influenzae Rd KW20

51.575

100

0.524
  comM Glaesserella parasuis strain SC1401

51.896

100

0.52
  comM Vibrio campbellii strain DS40M4

52.525

99

0.52
  comM Legionella pneumophila str. Paris

50.992

100

0.514
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.466

Multiple sequence alignment