Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BEI_RS00455 Genome accession   NZ_CP021435
Coordinates   94006..95511 (+) Length   501 a.a.
NCBI ID   WP_097787663.1    Uniprot ID   A0A291P2G9
Organism   Halomonas beimenensis strain NTU-111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 89006..100511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI_RS00430 (BEI_0089) - 89634..90848 (+) 1215 WP_097787659.1 DcaP family trimeric outer membrane transporter -
  BEI_RS00435 (BEI_0090) glnK 91115..91453 (-) 339 WP_097790945.1 P-II family nitrogen regulator -
  BEI_RS00440 (BEI_0091) - 91593..92915 (-) 1323 WP_097787660.1 ammonium transporter -
  BEI_RS00445 (BEI_0092) - 92954..93292 (-) 339 WP_097787661.1 P-II family nitrogen regulator -
  BEI_RS00450 (BEI_0093) - 93582..93941 (+) 360 WP_097787662.1 accessory factor UbiK family protein -
  BEI_RS00455 (BEI_0094) comM 94006..95511 (+) 1506 WP_097787663.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BEI_RS00460 (BEI_0095) - 95522..96010 (-) 489 WP_097787664.1 hypothetical protein -
  BEI_RS00465 (BEI_0096) - 96007..96996 (-) 990 WP_097787665.1 alpha/beta hydrolase -
  BEI_RS00470 (BEI_0097) - 97237..99411 (+) 2175 WP_097787666.1 malate synthase G -
  BEI_RS00475 (BEI_0098) - 99540..99953 (+) 414 WP_097787667.1 PaaI family thioesterase -
  BEI_RS00480 (BEI_0099) - 99929..100321 (-) 393 WP_097787668.1 DUF423 domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53102.00 Da        Isoelectric Point: 7.3996

>NTDB_id=230733 BEI_RS00455 WP_097787663.1 94006..95511(+) (comM) [Halomonas beimenensis strain NTU-111]
MTLAIVRTRAGLGLEAPEVQVEVHLANGLPGMTLVGLPETAVRESRERVRSALVNAGFDFPLRRITLNLAPADLPKDGGR
FDLPIALGLLVASGQLPPEALDDTESAGELALDGTLRPVAGALPLALATRAAGRRLILPRANAEEAALAGDIEVLPADHL
LEVVAHLLGQAPIAPHRSSCPSRSPEAELDLAEVRGQHQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLPGILPPLTG
DEALEVAAVRSVCGLPIAEHWGRRPFRSPHHTASAVALVGGGSRPRPGEISLAHHGVLFLDELPEFPRQVLEVMREPMES
GTIHIARAHHERRYPACFQLVAAMNPCPCGHLGDPRRACHCTAAQIQRYQARLSGPLLDRIDLQVEVPAPSAEQLTAQAP
GESSAAVRRRVLAARARQRARGALNAHLAGGALEDACALGGEDRAWLAGVLERLQLSARAFHRVLRVALTLADLSGEPRP
GRDQLIEAIGYRQLDRLLSGG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=230733 BEI_RS00455 WP_097787663.1 94006..95511(+) (comM) [Halomonas beimenensis strain NTU-111]
ATGACGCTGGCAATCGTACGCACCCGGGCCGGCCTCGGCCTCGAGGCGCCCGAGGTGCAGGTGGAAGTCCATCTGGCCAA
CGGCCTGCCCGGGATGACCCTGGTCGGGCTGCCCGAGACCGCCGTCCGGGAAAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAACGCCGGCTTCGACTTCCCGCTGCGGCGCATCACCCTCAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGCCCATCGCCCTGGGCCTGCTGGTGGCCTCGGGGCAACTCCCCCCCGAGGCCCTGGACGACACCGAGTCGGC
GGGCGAGCTGGCGCTGGACGGCACCCTGCGACCGGTGGCCGGGGCCTTGCCCCTGGCGCTGGCGACCCGGGCCGCCGGCC
GCCGGCTGATCCTGCCCCGGGCCAACGCCGAGGAGGCGGCGCTGGCCGGCGATATCGAGGTGCTGCCCGCCGATCACTTG
CTCGAGGTGGTGGCCCACCTGCTGGGGCAGGCGCCCATCGCCCCCCATCGCTCGTCCTGCCCGTCCCGGAGCCCGGAGGC
GGAGCTCGACCTCGCCGAGGTGCGCGGCCAGCACCAGGCCCGTCGCGCCCTGGAGGTGGCGGCCGCCGGCGGCCACAACC
TGCTGCTGGCGGGGCCGCCGGGCACCGGCAAGACCATGCTCGCCAGCCGGCTGCCGGGGATCCTGCCGCCCTTGACCGGG
GACGAGGCCCTGGAGGTGGCGGCCGTGCGCTCGGTGTGCGGCCTGCCGATCGCCGAGCACTGGGGGCGGCGCCCCTTCCG
GTCGCCGCATCATACCGCCAGCGCCGTGGCTCTGGTCGGCGGCGGGTCACGGCCGAGACCCGGCGAGATTTCCCTGGCCC
ACCATGGCGTGCTCTTCCTCGACGAGCTGCCCGAGTTTCCCCGCCAGGTGCTCGAGGTGATGCGCGAGCCCATGGAGTCG
GGGACCATCCATATCGCCCGTGCCCATCATGAACGGCGCTATCCGGCATGCTTCCAGCTCGTCGCGGCGATGAACCCCTG
TCCCTGCGGCCATCTCGGCGATCCGCGCCGGGCCTGTCACTGTACCGCCGCCCAGATCCAGCGTTATCAGGCCCGGCTGT
CCGGCCCGCTGCTCGATCGTATCGACCTGCAGGTCGAGGTGCCGGCCCCGAGCGCCGAGCAGTTGACCGCGCAGGCACCG
GGGGAGTCCTCGGCGGCGGTGCGCAGGCGCGTCCTGGCGGCCCGAGCCCGCCAGCGGGCGCGTGGTGCCCTCAATGCCCA
CTTGGCGGGGGGGGCGCTGGAAGACGCCTGCGCCCTGGGCGGCGAGGATCGAGCCTGGCTGGCCGGCGTGCTGGAGCGGT
TGCAGCTGTCGGCCCGCGCCTTCCATCGGGTGCTGCGGGTGGCGCTGACCCTGGCGGACCTCTCGGGCGAGCCCCGCCCC
GGGCGCGACCAGCTCATCGAGGCGATCGGCTATCGGCAGCTCGATCGATTGCTGAGCGGCGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291P2G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.877

100

0.541
  comM Vibrio campbellii strain DS40M4

53.28

100

0.535
  comM Haemophilus influenzae Rd KW20

52.964

100

0.535
  comM Glaesserella parasuis strain SC1401

52.964

100

0.535
  comM Legionella pneumophila str. Paris

49.9

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.485

99.202

0.471

Multiple sequence alignment