Detailed information NTG0230663

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSB94_RS00585
• Genome accession: NZ_CP027166
• Coordinates: 127541..128545 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AR_0357
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 122541..133545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB94_RS00565 (CSB94_0114)	-	123024..124031 (+)	1008	WP_003092265.1	TolB family protein	-
CSB94_RS00575 (CSB94_0116)	mutS	124157..126724 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
CSB94_RS00580 (CSB94_0117)	fdxA	126791..127114 (+)	324	WP_003092272.1	ferredoxin FdxA	-
CSB94_RS00585 (CSB94_0118)	rpoS	127541..128545 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CSB94_RS00590 (CSB94_0119)	-	128650..129543 (-)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
CSB94_RS00595 (CSB94_0120)	-	129589..130224 (-)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CSB94_RS00600 (CSB94_0121)	surE	130257..131006 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CSB94_RS00605 (CSB94_0122)	truD	130994..132061 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
CSB94_RS00610 (CSB94_0123)	ispF	132058..132531 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSB94_RS00615 (CSB94_0124)	fghA	132602..133453 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=230663 CSB94_RS00585 WP_003113871.1 127541..128545(-) (rpoS) [Pseudomonas aeruginosa strain AR_0357]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=230663 CSB94_RS00585 WP_003113871.1 127541..128545(-) (rpoS) [Pseudomonas aeruginosa strain AR_0357]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653