Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CCK83_RS04720 Genome accession   NZ_CP021428
Coordinates   983324..983851 (-) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978324..988851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04700 - 978557..979426 (-) 870 WP_039765203.1 hypothetical protein -
  CCK83_RS04705 aroB 979443..980525 (-) 1083 WP_087400195.1 3-dehydroquinate synthase -
  CCK83_RS04710 aroK 980554..981123 (-) 570 WP_002116987.1 shikimate kinase AroK -
  CCK83_RS04715 pilQ 981135..983261 (-) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  CCK83_RS04720 pilP 983324..983851 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  CCK83_RS04725 pilO 983862..984614 (-) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  CCK83_RS04730 pilN 984611..985252 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  CCK83_RS04735 pilM 985252..986310 (-) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=230663 CCK83_RS04720 WP_002116864.1 983324..983851(-) (pilP) [Acinetobacter pittii strain HUMV-6483]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=230663 CCK83_RS04720 WP_002116864.1 983324..983851(-) (pilP) [Acinetobacter pittii strain HUMV-6483]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCCGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709

Multiple sequence alignment