Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CCK83_RS04730 Genome accession   NZ_CP021428
Coordinates   984611..985252 (-) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 979611..990252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS04710 aroK 980554..981123 (-) 570 WP_002116987.1 shikimate kinase AroK -
  CCK83_RS04715 pilQ 981135..983261 (-) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  CCK83_RS04720 pilP 983324..983851 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  CCK83_RS04725 pilO 983862..984614 (-) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  CCK83_RS04730 pilN 984611..985252 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  CCK83_RS04735 pilM 985252..986310 (-) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  CCK83_RS04740 ponA 986472..989033 (+) 2562 WP_125518618.1 penicillin-binding protein PBP1a -
  CCK83_RS04745 rrmA 989048..989872 (-) 825 WP_087400197.1 putative RNA methyltransferase -
  CCK83_RS04750 - 989875..990207 (-) 333 WP_002116981.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=230665 CCK83_RS04730 WP_002116944.1 984611..985252(-) (pilN) [Acinetobacter pittii strain HUMV-6483]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=230665 CCK83_RS04730 WP_002116944.1 984611..985252(-) (pilN) [Acinetobacter pittii strain HUMV-6483]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATTATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGTTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGCATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTGCGTTTGGTGGATGAATTAGTACG
TGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment