Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CBW24_RS10115 Genome accession   NZ_CP021404
Coordinates   2231071..2231592 (+) Length   173 a.a.
NCBI ID   WP_097373513.1    Uniprot ID   -
Organism   Pacificitalea manganoxidans strain DY25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2226071..2236592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBW24_RS10090 (CBW24_10075) moaA 2226472..2227542 (-) 1071 WP_097374198.1 GTP 3',8-cyclase MoaA -
  CBW24_RS10095 (CBW24_10080) - 2227664..2228254 (+) 591 WP_232529680.1 D-galactarate dehydratase -
  CBW24_RS10100 (CBW24_10085) - 2228233..2229360 (-) 1128 WP_157773194.1 AI-2E family transporter -
  CBW24_RS10105 (CBW24_10090) - 2229547..2230113 (-) 567 WP_232530312.1 lytic transglycosylase domain-containing protein -
  CBW24_RS10110 (CBW24_10095) - 2230334..2230864 (-) 531 WP_097373512.1 cytochrome b/b6 domain-containing protein -
  CBW24_RS10115 (CBW24_10100) ssb 2231071..2231592 (+) 522 WP_097373513.1 single-stranded DNA-binding protein Machinery gene
  CBW24_RS10120 (CBW24_10105) aroB 2231721..2232866 (-) 1146 WP_097373514.1 3-dehydroquinate synthase -
  CBW24_RS10125 (CBW24_10110) - 2232866..2233411 (-) 546 WP_232529682.1 shikimate kinase -
  CBW24_RS10135 (CBW24_10115) - 2233682..2235262 (+) 1581 WP_232529684.1 hypothetical protein -
  CBW24_RS10140 (CBW24_10120) - 2235259..2236278 (+) 1020 WP_097373517.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18368.93 Da        Isoelectric Point: 5.3335

>NTDB_id=230551 CBW24_RS10115 WP_097373513.1 2231071..2231592(+) (ssb) [Pacificitalea manganoxidans strain DY25]
MAGSVNKVIIVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDGRNDGGSGGGNYGGSSGGGYPDDRGGPSGGYGGGSSGGYGGGSGG
GSPSSDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=230551 CBW24_RS10115 WP_097373513.1 2231071..2231592(+) (ssb) [Pacificitalea manganoxidans strain DY25]
ATGGCAGGATCGGTGAACAAGGTAATCATCGTCGGCAATCTGGGCCGCGATCCCGAGGTGCGGACCTTCCAGAATGGCGG
CAAGGTCTGCAACCTGCGGATCGCGACCTCTGAAAACTGGAAGGATCGCAACACCGGCGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTCGCGATCTTCTCCGAGCCGCTCGCCCGGATCGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTATATC
GAAGGCCAGTTGGAAACCCGCAAATGGCAGGACCAGTCCGGTCAGGACCGCTATTCCACCGAGGTGGTGCTGCGTCCCTA
CCGTGGCGAACTGACCCTGCTCGACGGGCGCAATGACGGCGGCTCCGGCGGTGGCAACTACGGTGGTAGCTCCGGCGGCG
GCTACCCCGATGATCGCGGCGGTCCCTCCGGTGGCTATGGCGGTGGCTCCAGCGGCGGTTACGGCGGTGGCTCCGGTGGC
GGCTCCCCCAGCAGCGATCTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.526
  ssb Vibrio cholerae strain A1552

51.149

100

0.514
  ssb Neisseria gonorrhoeae MS11

40.761

100

0.434
  ssb Neisseria meningitidis MC58

40.556

100

0.422

Multiple sequence alignment