Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CBR65_RS12835 Genome accession   NZ_CP021382
Coordinates   3083456..3084976 (+) Length   506 a.a.
NCBI ID   WP_087467215.1    Uniprot ID   A0A1Y0FXW5
Organism   Cellvibrio sp. PSBB006     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3078456..3089976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBR65_RS12805 (CBR65_12785) - 3079245..3079547 (-) 303 WP_087467209.1 hypothetical protein -
  CBR65_RS12810 (CBR65_12790) - 3080016..3080360 (+) 345 WP_087467210.1 hypothetical protein -
  CBR65_RS12815 (CBR65_12795) - 3080447..3080785 (-) 339 WP_087467211.1 P-II family nitrogen regulator -
  CBR65_RS12820 (CBR65_12800) - 3081017..3082282 (-) 1266 WP_087467212.1 ammonium transporter -
  CBR65_RS12825 (CBR65_12805) - 3082314..3082652 (-) 339 WP_087467213.1 P-II family nitrogen regulator -
  CBR65_RS12830 (CBR65_12810) - 3083131..3083373 (+) 243 WP_087467214.1 accessory factor UbiK family protein -
  CBR65_RS12835 (CBR65_12815) comM 3083456..3084976 (+) 1521 WP_087467215.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CBR65_RS12840 (CBR65_12820) - 3085010..3085915 (-) 906 WP_087467216.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55249.90 Da        Isoelectric Point: 7.8066

>NTDB_id=230325 CBR65_RS12835 WP_087467215.1 3083456..3084976(+) (comM) [Cellvibrio sp. PSBB006]
MSLAIVYSRAKLGVSAPLVTVEVHLSNGLPSLSIVGLPETAVKESKDRVRSAILNSHLEFPARRITVNLAPADLPKEGGR
YDLAIALGILAASGQIPKESLAEYEFLGELALSGELRPINAALPAALASGDVQRRLILPTHNATEAALSNTTRVYGSDNL
LQVCAHLHQREFLFQAEAAVAADNDDYLDLSDVKGQAQAKRALEIAASGGHNLLLYGPPGTGKTMLASRLPGILPALDER
EMLDVAAVYSAAPSVTSQTGTHAWRKRPFRAPHHTASAIALVGGGPNPRPGEISLAHRGVLFLDELPEFQRQVLEVLREP
LESGEVRISRARAQVTYPAHFQLVAAMNPCPCGYHGSDSDRCRCTPDQVRRYRDKISGPLLDRIDMHVPVRALKQGELHA
PSTGDNSTRVRERVEQTRTRQLDRQGKYNHQLNAPELERFCVLNNNDKLLLEQAIDKLGLSTRAYHRVLKVARTLADMEG
LQQPGTTQITEALSYRTLDRENLSTI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=230325 CBR65_RS12835 WP_087467215.1 3083456..3084976(+) (comM) [Cellvibrio sp. PSBB006]
ATGTCACTGGCTATTGTTTATTCACGCGCAAAGCTCGGTGTCAGCGCCCCGCTGGTCACTGTAGAAGTTCATCTATCCAA
TGGCCTGCCAAGCCTTTCCATCGTCGGGTTACCGGAAACGGCGGTCAAGGAAAGCAAAGACCGGGTGCGCAGTGCCATCC
TGAACAGCCATCTCGAATTTCCCGCACGCCGCATTACCGTCAACCTGGCGCCTGCAGATTTGCCAAAAGAAGGTGGCCGC
TACGACCTGGCGATCGCCCTTGGTATTCTCGCCGCCTCCGGGCAAATCCCCAAAGAAAGTCTGGCAGAGTATGAATTTCT
CGGTGAATTGGCACTCTCTGGCGAACTGCGCCCGATTAATGCTGCTTTACCTGCCGCCCTCGCCAGCGGGGATGTCCAAC
GTCGCCTGATCCTGCCCACACATAATGCAACTGAAGCCGCACTCAGTAACACAACTCGCGTTTACGGCAGTGATAACCTG
CTTCAGGTCTGCGCGCACCTGCATCAGCGGGAATTTTTATTTCAAGCCGAGGCAGCGGTAGCCGCCGATAACGATGATTA
TCTGGATTTGAGCGATGTAAAAGGACAAGCGCAGGCAAAACGCGCGTTGGAGATAGCTGCCAGCGGTGGACACAATTTGC
TGCTTTACGGTCCACCGGGCACCGGGAAAACCATGCTGGCCAGTCGTCTGCCGGGGATATTGCCGGCACTGGATGAACGG
GAGATGCTGGATGTTGCGGCAGTTTATTCCGCCGCACCTTCCGTCACATCACAGACGGGCACCCACGCTTGGCGAAAACG
GCCGTTTCGCGCGCCGCACCATACTGCGTCAGCGATTGCTCTGGTAGGCGGCGGTCCCAACCCGCGGCCCGGTGAAATTT
CTCTGGCCCATCGCGGCGTCCTGTTTCTGGATGAGTTGCCGGAATTTCAACGCCAGGTCCTGGAAGTATTGCGCGAACCC
CTGGAAAGCGGTGAAGTGCGCATCTCCCGCGCAAGAGCGCAGGTCACTTATCCCGCACACTTTCAATTGGTTGCCGCCAT
GAACCCCTGCCCGTGCGGTTATCACGGCAGTGATTCCGATCGATGTCGCTGCACACCGGATCAAGTCCGCCGGTACCGCG
ATAAAATTTCCGGCCCTTTGCTTGATCGCATCGACATGCATGTTCCCGTCAGGGCACTCAAGCAAGGCGAACTACACGCA
CCATCAACCGGCGATAACAGCACACGTGTACGCGAGCGGGTTGAACAAACCAGAACCCGACAACTCGACCGGCAGGGAAA
ATACAATCACCAGCTCAACGCACCGGAACTGGAGCGCTTTTGTGTGTTGAACAATAACGACAAGTTATTGCTGGAACAGG
CCATTGATAAGCTCGGCCTTTCAACTCGCGCATATCACCGGGTGTTAAAAGTGGCACGCACGCTGGCGGATATGGAAGGC
TTGCAGCAACCCGGTACAACACAAATTACTGAAGCCTTGAGTTACCGCACACTGGATCGGGAGAATTTATCGACCATTTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0FXW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.357

99.605

0.551
  comM Vibrio cholerae strain A1552

55.467

99.407

0.551
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Haemophilus influenzae Rd KW20

54.545

100

0.545
  comM Legionella pneumophila str. Paris

54.108

98.617

0.534
  comM Legionella pneumophila strain ERS1305867

54.108

98.617

0.534
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.484

100

0.47

Multiple sequence alignment