Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CBR65_RS08970 Genome accession   NZ_CP021382
Coordinates   2177952..2178506 (-) Length   184 a.a.
NCBI ID   WP_087466542.1    Uniprot ID   A0A1Y0FWX7
Organism   Cellvibrio sp. PSBB006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2172952..2183506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBR65_RS08950 (CBR65_08935) ftsH 2173417..2175336 (-) 1920 WP_087468992.1 ATP-dependent zinc metalloprotease FtsH -
  CBR65_RS08955 (CBR65_08940) - 2175740..2176042 (+) 303 WP_087466540.1 YhbY family RNA-binding protein -
  CBR65_RS08960 (CBR65_08945) - 2176068..2176964 (-) 897 WP_198300917.1 AraC family transcriptional regulator -
  CBR65_RS08965 (CBR65_08950) - 2177140..2177874 (+) 735 WP_087466541.1 SDR family oxidoreductase -
  CBR65_RS08970 (CBR65_08955) ssb 2177952..2178506 (-) 555 WP_087466542.1 single-stranded DNA-binding protein Machinery gene
  CBR65_RS08975 (CBR65_08960) - 2178608..2179969 (-) 1362 WP_232461404.1 MFS transporter -
  CBR65_RS08980 (CBR65_08965) uvrA 2180149..2183043 (+) 2895 WP_087466543.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19825.60 Da        Isoelectric Point: 5.2404

>NTDB_id=230320 CBR65_RS08970 WP_087466542.1 2177952..2178506(-) (ssb) [Cellvibrio sp. PSBB006]
MARGINKVILIGNVGQDPEVKYMPSGGAVTNISVATSETWKDKNTGQPQERTEWHRVVFFNRLGEIAGEYLRKGSKVYIE
GSLRTRKWQAQDGTDRYTTEIVANEMQMLDSRGDNSGSSMGGDYGQGYNQGQNYNQSKPAASGPQAAPQHGNQGGGYASS
GAGQGNAPQQPPAGFDSFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=230320 CBR65_RS08970 WP_087466542.1 2177952..2178506(-) (ssb) [Cellvibrio sp. PSBB006]
ATGGCTCGTGGCATCAATAAAGTAATTCTGATTGGTAATGTGGGTCAGGACCCGGAAGTCAAATATATGCCGTCCGGTGG
CGCGGTAACGAATATCAGTGTGGCAACCTCGGAAACCTGGAAAGACAAAAACACCGGGCAACCCCAGGAGCGTACTGAGT
GGCACAGAGTCGTATTTTTTAATCGCCTCGGTGAAATAGCGGGCGAATATCTGCGTAAAGGCAGCAAGGTTTATATCGAA
GGGTCCTTGCGCACCCGTAAATGGCAAGCGCAGGATGGCACAGACAGATACACCACCGAAATTGTCGCCAATGAGATGCA
GATGCTCGATAGCCGCGGTGACAATTCCGGTAGCAGTATGGGGGGCGACTACGGCCAGGGTTACAATCAGGGTCAAAACT
ATAATCAGTCCAAGCCAGCGGCAAGTGGCCCGCAAGCAGCACCTCAACACGGTAATCAAGGTGGTGGTTATGCCTCCTCC
GGGGCTGGGCAGGGTAATGCGCCCCAACAACCACCGGCAGGTTTTGACAGCTTTGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0FWX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.158

100

0.549
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.538
  ssb Neisseria meningitidis MC58

49.18

99.457

0.489
  ssb Neisseria gonorrhoeae MS11

49.444

97.826

0.484

Multiple sequence alignment