Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CBP12_RS12030 | Genome accession | NZ_CP021376 |
| Coordinates | 2610450..2611052 (+) | Length | 200 a.a. |
| NCBI ID | WP_086964739.1 | Uniprot ID | A0A1Y0CZN7 |
| Organism | Oceanisphaera avium strain AMac2203 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2605450..2616052
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBP12_RS12020 (CBP12_12015) | uvrA | 2606079..2608919 (-) | 2841 | WP_086964735.1 | excinuclease ABC subunit UvrA | - |
| CBP12_RS12025 (CBP12_12020) | - | 2609062..2610435 (+) | 1374 | WP_086964737.1 | MFS transporter | - |
| CBP12_RS12030 (CBP12_12025) | ssb | 2610450..2611052 (+) | 603 | WP_086964739.1 | single-stranded DNA-binding protein | Machinery gene |
| CBP12_RS12035 (CBP12_12030) | - | 2611212..2611415 (-) | 204 | WP_086964741.1 | hypothetical protein | - |
| CBP12_RS12040 (CBP12_12035) | - | 2611876..2612526 (-) | 651 | WP_086964743.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| CBP12_RS12045 (CBP12_12040) | - | 2612547..2612951 (-) | 405 | WP_086964745.1 | DUF4878 domain-containing protein | - |
| CBP12_RS12050 (CBP12_12045) | - | 2613058..2614272 (-) | 1215 | WP_086964747.1 | dicarboxylate/amino acid:cation symporter | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 21653.76 Da Isoelectric Point: 6.2391
>NTDB_id=230236 CBP12_RS12030 WP_086964739.1 2610450..2611052(+) (ssb) [Oceanisphaera avium strain AMac2203]
MANRGINKVILIGHLGQDPEIRYMPNGNAVANITLATSETWRDKQSGEQKERTEWHRVVFFGKLAEIVGEYLRKGSQVYI
EGRLQTRKWQGQDGQDRYTTEIVVDIGGTMQMLGGRPQGGGGQGGGQQGGWGGQQQGGQPQGGQGNWGGQPAAQQGQGNW
NQQAAPSQGQQHQSQSKPAAPPAAPTYNEPPMDFDDDIPF
MANRGINKVILIGHLGQDPEIRYMPNGNAVANITLATSETWRDKQSGEQKERTEWHRVVFFGKLAEIVGEYLRKGSQVYI
EGRLQTRKWQGQDGQDRYTTEIVVDIGGTMQMLGGRPQGGGGQGGGQQGGWGGQQQGGQPQGGQGNWGGQPAAQQGQGNW
NQQAAPSQGQQHQSQSKPAAPPAAPTYNEPPMDFDDDIPF
Nucleotide
Download Length: 603 bp
>NTDB_id=230236 CBP12_RS12030 WP_086964739.1 2610450..2611052(+) (ssb) [Oceanisphaera avium strain AMac2203]
ATGGCCAATAGAGGCATCAATAAAGTTATCCTGATCGGCCATCTGGGTCAGGATCCTGAAATACGTTATATGCCTAACGG
CAATGCGGTCGCCAATATTACCTTGGCCACCAGTGAAACCTGGCGCGACAAGCAGTCTGGCGAGCAGAAAGAAAGAACCG
AGTGGCATCGGGTAGTATTTTTCGGCAAATTAGCAGAAATTGTCGGTGAATATTTGCGTAAAGGCTCACAAGTGTACATT
GAAGGCCGCTTACAAACGCGTAAATGGCAAGGACAAGATGGCCAAGACAGATACACCACAGAAATAGTGGTCGATATCGG
CGGTACCATGCAAATGCTAGGTGGTCGCCCGCAAGGCGGCGGTGGCCAAGGTGGGGGTCAACAAGGTGGCTGGGGCGGTC
AACAACAAGGTGGCCAACCACAAGGCGGTCAAGGTAATTGGGGTGGACAGCCAGCGGCCCAACAAGGTCAAGGTAACTGG
AATCAGCAAGCGGCGCCATCACAAGGCCAGCAACACCAATCGCAAAGCAAACCAGCCGCTCCTCCCGCAGCTCCTACTTA
CAATGAGCCACCGATGGACTTCGATGATGATATTCCATTCTAA
ATGGCCAATAGAGGCATCAATAAAGTTATCCTGATCGGCCATCTGGGTCAGGATCCTGAAATACGTTATATGCCTAACGG
CAATGCGGTCGCCAATATTACCTTGGCCACCAGTGAAACCTGGCGCGACAAGCAGTCTGGCGAGCAGAAAGAAAGAACCG
AGTGGCATCGGGTAGTATTTTTCGGCAAATTAGCAGAAATTGTCGGTGAATATTTGCGTAAAGGCTCACAAGTGTACATT
GAAGGCCGCTTACAAACGCGTAAATGGCAAGGACAAGATGGCCAAGACAGATACACCACAGAAATAGTGGTCGATATCGG
CGGTACCATGCAAATGCTAGGTGGTCGCCCGCAAGGCGGCGGTGGCCAAGGTGGGGGTCAACAAGGTGGCTGGGGCGGTC
AACAACAAGGTGGCCAACCACAAGGCGGTCAAGGTAATTGGGGTGGACAGCCAGCGGCCCAACAAGGTCAAGGTAACTGG
AATCAGCAAGCGGCGCCATCACAAGGCCAGCAACACCAATCGCAAAGCAAACCAGCCGCTCCTCCCGCAGCTCCTACTTA
CAATGAGCCACCGATGGACTTCGATGATGATATTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
63.285 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
51.777 |
98.5 |
0.51 |
| ssb | Neisseria meningitidis MC58 |
46.193 |
98.5 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
46.193 |
98.5 |
0.455 |