Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB987_RS06330 Genome accession   NZ_CP021347
Coordinates   1296415..1297902 (+) Length   495 a.a.
NCBI ID   WP_049590758.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B8300     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1291415..1302902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS06305 (AB987_1267) ribD 1292331..1293416 (-) 1086 WP_001292517.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AB987_RS06310 (AB987_1268) nrdR 1293432..1293890 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  AB987_RS06315 (AB987_1269) - 1294049..1295446 (-) 1398 WP_000738520.1 ammonium transporter -
  AB987_RS06320 (AB987_1270) glnK 1295504..1295842 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AB987_RS06325 (AB987_1271) - 1296122..1296349 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  AB987_RS06330 (AB987_1272) comM 1296415..1297902 (+) 1488 WP_049590758.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB987_RS06335 (AB987_1273) - 1297917..1299351 (-) 1435 Protein_1224 PLP-dependent aminotransferase family protein -
  AB987_RS06340 (AB987_1274) - 1299462..1300238 (+) 777 WP_000845026.1 aldolase -
  AB987_RS06345 (AB987_1275) - 1300254..1301132 (+) 879 WP_000772980.1 dihydrodipicolinate synthase family protein -
  AB987_RS06350 (AB987_1276) - 1301175..1301987 (-) 813 WP_000975212.1 TorF family putative porin -
  AB987_RS19180 (AB987_1277) - 1302044..1302214 (-) 171 WP_002009550.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54487.34 Da        Isoelectric Point: 7.2753

>NTDB_id=230093 AB987_RS06330 WP_049590758.1 1296415..1297902(+) (comM) [Acinetobacter baumannii strain B8300]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMSYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=230093 AB987_RS06330 WP_049590758.1 1296415..1297902(+) (comM) [Acinetobacter baumannii strain B8300]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGCGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCCGTATCAGGCGCTTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGTCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGAGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCGCGGCAAATTACTTATCCTGCGAATTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGAC
CGTTACTTGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTTGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment