Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ALW85_RS01005 Genome accession   NC_004757
Coordinates   230541..232043 (+) Length   500 a.a.
NCBI ID   WP_011110838.1    Uniprot ID   Q82XR1
Organism   Nitrosomonas europaea ATCC 19718     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 225541..237043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALW85_RS00980 (NE0188) - 226510..227553 (+) 1044 WP_011110833.1 IS481 family transposase -
  ALW85_RS00985 (NE0189) - 227840..228148 (-) 309 WP_011110834.1 helix-turn-helix domain-containing protein -
  ALW85_RS00990 (NE0190) murU 228266..228997 (-) 732 WP_041356937.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ALW85_RS00995 (NE0191) - 229013..230011 (-) 999 WP_011110836.1 aminoglycoside phosphotransferase family protein -
  ALW85_RS01000 (NE0192) - 230167..230463 (+) 297 WP_011110837.1 accessory factor UbiK family protein -
  ALW85_RS01005 (NE0193) comM 230541..232043 (+) 1503 WP_011110838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ALW85_RS01010 (NE0194) dnaB 232072..233469 (-) 1398 WP_011110839.1 replicative DNA helicase -
  ALW85_RS01015 (NE0195) rplI 233577..234032 (-) 456 WP_011110840.1 50S ribosomal protein L9 -
  ALW85_RS01020 (NE0196) rpsR 234051..234281 (-) 231 WP_041356939.1 30S ribosomal protein S18 -
  ALW85_RS01025 (NE0197) priB 234366..234692 (-) 327 WP_011110842.1 primosomal replication protein N -
  ALW85_RS01030 (NE0198) rpsF 234676..235116 (-) 441 WP_011110843.1 30S ribosomal protein S6 -
  ALW85_RS14340 - 235170..235640 (-) 471 WP_234989039.1 hypothetical protein -
  ALW85_RS01035 (NE0199) - 235582..235884 (+) 303 WP_234989037.1 ATP synthase subunit I -
  ALW85_RS01040 (NE0200) atpB 235919..236728 (+) 810 WP_011110845.1 F0F1 ATP synthase subunit A -
  ALW85_RS01045 (NE0201) atpE 236771..237043 (+) 273 WP_011110846.1 F0F1 ATP synthase subunit C -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54630.01 Da        Isoelectric Point: 9.1159

>NTDB_id=22970 ALW85_RS01005 WP_011110838.1 230541..232043(+) (comM) [Nitrosomonas europaea ATCC 19718]
MSLAILYSRALCGMDAPLVTVEVHLSNGLPKFTIVGLPETEVRESKDRVHAAILNGRFKFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPADRLNQYEWAGELSLDGRLRPIRGALAMTYSASRSGRGFVLPEQNAGEAALVQEAKIYPATSL
LQLCAYLTGQKAWEPYSTKPNDEETAGSYPDMGEVKGQMQAKRALEIAAAGGHSVLMIGPPGTGKSMLARRIPGILPPMT
GQEALESAAIQSLGSGRFNLTDWKRRPFRAPHHTASAVALVGGGGIPRPGEISLAMNGVLFLDELPEFDRRVLEVLREPL
ESGYITISRATQRADFPARFQLIAAMNPCPCGYLGHYEGKCRCTPDQVARYRGKISGPLLDRIDIQIEVPALPKEDLLRP
GPGEPSAVIRSRTTVARQRQLDRQNVPNTELRVQEIEKLCHPDAEGKCMLERAMTRLNMSARAYHRILKLARTIADLSGS
EPVLGKHVAEAIQYRRMDIS

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=22970 ALW85_RS01005 WP_011110838.1 230541..232043(+) (comM) [Nitrosomonas europaea ATCC 19718]
ATGTCACTGGCCATTCTTTACAGCCGTGCATTATGTGGCATGGACGCGCCTCTGGTAACTGTTGAGGTGCATCTTTCCAA
TGGTCTTCCAAAATTTACCATTGTTGGTCTCCCTGAGACGGAAGTCAGAGAGAGTAAGGATAGAGTACACGCTGCCATAC
TGAACGGGCGTTTCAAATTTCCTGCACGGCGGATTACCGTCAATCTGGCTCCAGCTGATTTACCCAAGGAAAGCGGGCGT
TTCGATCTGCCGATCGCCTTGGGTATATTGGCTGCCAGTGGGCAAATTCCCGCAGACAGGCTGAATCAGTACGAATGGGC
GGGAGAATTATCACTCGATGGCCGGCTGCGTCCCATTCGTGGTGCATTGGCCATGACCTACAGTGCATCCCGTTCAGGTC
GCGGTTTCGTGTTGCCGGAACAGAATGCCGGGGAAGCGGCGCTGGTTCAGGAGGCGAAGATTTATCCCGCTACTTCATTG
TTGCAGTTGTGCGCTTATTTGACCGGTCAGAAAGCGTGGGAACCCTACAGTACCAAGCCGAATGATGAGGAAACTGCAGG
CAGCTACCCGGATATGGGAGAGGTCAAAGGCCAGATGCAGGCAAAGCGTGCATTGGAGATTGCGGCAGCAGGTGGTCACA
GTGTGCTGATGATCGGGCCGCCAGGTACCGGTAAATCCATGCTGGCACGGCGTATACCGGGTATTCTGCCGCCCATGACC
GGGCAGGAGGCGCTTGAATCGGCTGCCATTCAATCTTTGGGCAGCGGCAGATTCAATTTGACTGACTGGAAGCGTCGCCC
TTTCCGGGCACCGCATCATACGGCATCTGCGGTAGCACTGGTCGGTGGAGGGGGTATTCCACGTCCGGGTGAGATTTCAC
TGGCAATGAATGGTGTTTTATTTCTCGATGAGCTGCCTGAATTTGACCGGCGAGTGCTGGAAGTGCTGCGTGAACCGCTC
GAATCCGGTTACATTACCATTTCACGAGCTACACAGCGCGCAGATTTTCCGGCCAGATTCCAGCTCATCGCTGCGATGAA
CCCCTGCCCCTGTGGTTATCTCGGGCATTACGAGGGAAAGTGCCGTTGTACGCCTGATCAGGTGGCGCGCTATCGCGGCA
AAATATCTGGCCCGCTGCTGGATCGTATCGATATTCAGATCGAAGTGCCTGCTTTGCCGAAGGAAGATTTGTTGCGCCCG
GGGCCGGGTGAACCGAGTGCCGTTATCCGGTCAAGGACGACTGTTGCCCGGCAGCGTCAGTTGGATCGTCAAAATGTACC
CAACACGGAGCTGAGGGTGCAGGAGATAGAAAAACTTTGTCATCCGGATGCAGAGGGTAAATGCATGCTGGAACGGGCTA
TGACTCGCCTGAATATGTCGGCACGGGCTTATCACAGGATACTGAAACTGGCTCGAACCATTGCGGATTTATCAGGCAGT
GAGCCTGTTCTGGGAAAACATGTGGCGGAAGCCATTCAATACCGCCGTATGGATATAAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q82XR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.666

100

0.56
  comM Vibrio campbellii strain DS40M4

55.6

100

0.556
  comM Haemophilus influenzae Rd KW20

53.877

100

0.542
  comM Glaesserella parasuis strain SC1401

53.069

100

0.536
  comM Legionella pneumophila str. Paris

49.799

99.6

0.496
  comM Legionella pneumophila strain ERS1305867

49.799

99.6

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.129

100

0.476

Multiple sequence alignment