Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SMU_RS00385 Genome accession   NC_004350
Coordinates   65256..66251 (+) Length   331 a.a.
NCBI ID   WP_002263402.1    Uniprot ID   -
Organism   Streptococcus mutans UA159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60256..71251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS00370 (SMU.60) - 60562..61248 (+) 687 WP_002263399.1 DNA alkylation repair protein -
  SMU_RS00375 (SMU.61) comR 61631..62545 (+) 915 WP_002263400.1 helix-turn-helix domain-containing protein Regulator
  SMU_RS00380 (SMU.63c) - 63079..64920 (-) 1842 WP_002263401.1 carbohydrate-binding domain-containing protein -
  SMU_RS00385 (SMU.64) ruvB 65256..66251 (+) 996 WP_002263402.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SMU_RS00390 (SMU.65) - 66289..66714 (+) 426 WP_002263403.1 low molecular weight protein-tyrosine-phosphatase -
  SMU_RS00395 (SMU.66) - 66779..67162 (+) 384 WP_011074470.1 membrane protein -
  SMU_RS00400 (SMU.67) - 67159..68949 (+) 1791 WP_002310757.1 acyltransferase family protein -
  SMU_RS00405 (SMU.70) thrC 69631..71115 (+) 1485 WP_002263406.1 threonine synthase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37287.75 Da        Isoelectric Point: 4.7070

>NTDB_id=22940 SMU_RS00385 WP_002263402.1 65256..66251(+) (ruvB) [Streptococcus mutans UA159]
MTRILDNELMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATAK
AYEHLGYRYTE

Nucleotide


Download         Length: 996 bp        

>NTDB_id=22940 SMU_RS00385 WP_002263402.1 65256..66251(+) (ruvB) [Streptococcus mutans UA159]
ATGACTAGAATTTTAGATAACGAACTTATGGGTGATGAGGAATTTGCAGAACGCACACTTCGTCCGCAGTATTTACAGGA
ATATATTGGTCAGGATAAGGTTAAAGACCAGCTGAAGATCTTCATCAAAGCAGCTAAACAACGTGATGAGGCTTTGGATC
ATGTCCTTTTATTTGGTCCTCCTGGCCTTGGTAAGACCACCATGGCTTTTGTTATTGCCAATGAATTGGGGGTTAATCTT
AAGCAAACCAGCGGTCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTGTTTTAAATGATTTAGAGCCTGGGGATGTTCT
TTTTATTGATGAAATTCATCGGCTGCCTATGGCTGTTGAGGAAGTTCTTTATAGTGCCATGGAAGATTTTTATATTGACA
TTATGATTGGTGCAGGAGAAACTTCTCGCAGCGTGCATTTGGATTTGCCGCCTTTTACTTTAATTGGGGCGACAACACGG
GCAGGTATGTTGTCAAATCCTTTGCGTGCGCGTTTTGGGATTACAGGTCATATGGAATATTATACAGATATCGATTTAAC
TGAAATTGTTGAGCGAACAGCGGATATTTTTGAGATGACCATTACCCATCAAGCTGCGTTAGAATTAGCACGGCGTTCCC
GTGGGACTCCGCGTATTGCTAACCGACTCTTAAAACGTGTCCGAGATTATGCCCAAATTATGGGAGATGGTCTTATTGAT
GATAAAATAACAGATAAAGCTTTGACCATGCTTGATGTTGATCATGAAGGCCTTGATTATGTTGATCAGAAGATCCTTAA
GACGATGATTGAGATGTACCATGGCGGGCCTGTTGGTCTGGGGACTCTGTCAGTTAATATTGCCGAGGAACGTGAGACCG
TTGAAGACATGTATGAGCCCTATCTTATTCAAAAAGGATTTATCATACGGACTCGCAGTGGACGTGTAGCCACTGCCAAA
GCTTATGAACATTTGGGTTATCGTTACACAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

91.239

100

0.912
  ruvB Streptococcus pneumoniae R6

90.937

100

0.909
  ruvB Streptococcus pneumoniae D39

90.937

100

0.909
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.991

97.583

0.595
  ruvB Helicobacter pylori 26695

50.464

97.583

0.492
  ruvB Synechocystis sp. PCC 6803

50.479

94.562

0.477

Multiple sequence alignment