Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CA926_RS05120 Genome accession   NZ_CP021265
Coordinates   1131004..1131603 (+) Length   199 a.a.
NCBI ID   WP_027221266.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1126004..1136603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS05105 ravI 1127948..1128955 (-) 1008 WP_027227632.1 Dot/Icm T4SS effector RavI -
  CA926_RS05110 pilM 1129374..1130438 (+) 1065 WP_028379151.1 type IV pilus assembly protein PilM Machinery gene
  CA926_RS05115 pilN 1130442..1130990 (+) 549 WP_028379152.1 PilN domain-containing protein Machinery gene
  CA926_RS05120 pilO 1131004..1131603 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA926_RS05125 pilP 1131600..1132184 (+) 585 WP_028377949.1 pilus assembly protein PilP Machinery gene
  CA926_RS05130 pilQ 1132188..1134284 (+) 2097 WP_028377950.1 type IV pilus secretin PilQ Machinery gene
  CA926_RS05135 aroK 1134732..1135253 (+) 522 WP_027219629.1 shikimate kinase AroK -
  CA926_RS05140 aroB 1135240..1136343 (+) 1104 WP_028379153.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22441.13 Da        Isoelectric Point: 5.3305

>NTDB_id=229332 CA926_RS05120 WP_027221266.1 1131004..1131603(+) (pilO) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MDTVNLSELTLENVGQWPMPVKIGVILGISILIIGLGYWLIVKPNFEQLDTLEAQEIALKTEFEKKQHQAANLQAYRNQL
QLMNERFGTMLKQLPAKNEMPGLLEEISKTGIASGLKFELFAPQPEVVHDFYVELPIKITIVGSYMQLARFLSRVAEMNR
IVTLHEFSVEGVSSGDGKTVSQDELVMGITAKIYRYRAQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=229332 CA926_RS05120 WP_027221266.1 1131004..1131603(+) (pilO) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGGATACAGTCAATTTAAGTGAATTAACTCTGGAGAATGTCGGCCAGTGGCCAATGCCGGTTAAAATCGGAGTCATTTT
AGGCATCAGTATATTGATAATTGGATTGGGATATTGGCTTATTGTTAAGCCTAATTTTGAGCAATTGGATACACTGGAAG
CCCAGGAAATTGCTTTGAAAACAGAGTTTGAAAAAAAACAACATCAGGCAGCAAATCTACAAGCCTATCGTAATCAGTTA
CAGTTAATGAATGAACGCTTCGGAACCATGCTAAAACAACTACCGGCAAAAAATGAAATGCCTGGGCTTTTGGAAGAAAT
ATCTAAAACAGGGATCGCATCGGGTTTGAAATTTGAATTGTTTGCACCACAACCTGAGGTAGTGCATGATTTTTATGTGG
AGTTACCTATAAAAATTACGATTGTCGGATCCTATATGCAATTAGCAAGATTTTTAAGTCGTGTCGCTGAAATGAACAGA
ATCGTGACTTTGCATGAATTTAGTGTTGAGGGGGTATCCTCCGGGGATGGTAAAACGGTCTCTCAGGATGAATTGGTGAT
GGGTATCACCGCTAAAATATACAGATATCGGGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(49-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

97.487

100

0.975
  comO Acinetobacter baylyi ADP1

39.894

94.472

0.377
  pilO Acinetobacter baumannii D1279779

38.22

95.98

0.367

Multiple sequence alignment