Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CA926_RS05115 Genome accession   NZ_CP021265
Coordinates   1130442..1130990 (+) Length   182 a.a.
NCBI ID   WP_028379152.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125442..1135990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS05105 ravI 1127948..1128955 (-) 1008 WP_027227632.1 Dot/Icm T4SS effector RavI -
  CA926_RS05110 pilM 1129374..1130438 (+) 1065 WP_028379151.1 type IV pilus assembly protein PilM Machinery gene
  CA926_RS05115 pilN 1130442..1130990 (+) 549 WP_028379152.1 PilN domain-containing protein Machinery gene
  CA926_RS05120 pilO 1131004..1131603 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA926_RS05125 pilP 1131600..1132184 (+) 585 WP_028377949.1 pilus assembly protein PilP Machinery gene
  CA926_RS05130 pilQ 1132188..1134284 (+) 2097 WP_028377950.1 type IV pilus secretin PilQ Machinery gene
  CA926_RS05135 aroK 1134732..1135253 (+) 522 WP_027219629.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21264.06 Da        Isoelectric Point: 10.1404

>NTDB_id=229331 CA926_RS05115 WP_028379152.1 1130442..1130990(+) (pilN) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MTEINLLPWREQKREQEKKLFTTMLLIGIIVAAAIVFLMNSYVSHLISNQTQRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGIYITKMQREHDVITLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
IVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=229331 CA926_RS05115 WP_028379152.1 1130442..1130990(+) (pilN) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGACTGAGATTAATTTATTACCATGGCGTGAGCAAAAACGGGAACAGGAAAAGAAATTATTCACGACCATGCTATTGAT
AGGGATTATCGTTGCCGCGGCAATCGTTTTTTTAATGAATTCTTATGTTTCCCATTTAATAAGTAATCAAACGCAGCGGA
ACCAGATTTTACAGAAAGAAATTACAGCCTTAGATGAGCAAATCAAGGAGATCAAGGCATTAAAGCAAATCAGGGAAGGT
TTGATTTCAAGGATGTCTATCGTGCAGAACCTGCAATCAACAAGAACGTTAATGGTTCATTTATTTGATGAGTTAATTAA
AATTACTCCTCCAGGAATTTACATAACCAAGATGCAAAGAGAACATGATGTCATAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAAAATCCCGTACTTACTGAAATTAAAAAA
ATTGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

97.253

100

0.973

Multiple sequence alignment