Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CA934_RS05055 Genome accession   NZ_CP021259
Coordinates   1093310..1093909 (+) Length   199 a.a.
NCBI ID   WP_027221266.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088310..1098909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS05040 - 1090248..1091261 (-) 1014 WP_027221263.1 hypothetical protein -
  CA934_RS05045 pilM 1091680..1092744 (+) 1065 WP_027221264.1 pilus assembly protein PilM Machinery gene
  CA934_RS05050 pilN 1092748..1093296 (+) 549 WP_106224992.1 PilN domain-containing protein Machinery gene
  CA934_RS05055 pilO 1093310..1093909 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA934_RS05060 pilP 1093906..1094490 (+) 585 WP_027221267.1 pilus assembly protein PilP Machinery gene
  CA934_RS05065 pilQ 1094494..1096590 (+) 2097 WP_027221268.1 type IV pilus secretin PilQ Machinery gene
  CA934_RS05070 aroK 1097033..1097560 (+) 528 WP_032828804.1 shikimate kinase AroK -
  CA934_RS05075 aroB 1097547..1098650 (+) 1104 WP_027221270.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22441.13 Da        Isoelectric Point: 5.3305

>NTDB_id=229165 CA934_RS05055 WP_027221266.1 1093310..1093909(+) (pilO) [Legionella pneumophila strain D-7708]
MDTVNLSELTLENVGQWPMPVKIGVILGISILIIGLGYWLIVKPNFEQLDTLEAQEIALKTEFEKKQHQAANLQAYRNQL
QLMNERFGTMLKQLPAKNEMPGLLEEISKTGIASGLKFELFAPQPEVVHDFYVELPIKITIVGSYMQLARFLSRVAEMNR
IVTLHEFSVEGVSSGDGKTVSQDELVMGITAKIYRYRAQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=229165 CA934_RS05055 WP_027221266.1 1093310..1093909(+) (pilO) [Legionella pneumophila strain D-7708]
ATGGATACAGTCAATTTAAGTGAATTAACTCTGGAGAATGTCGGCCAGTGGCCAATGCCGGTTAAAATCGGAGTCATTTT
AGGCATCAGTATATTGATAATTGGATTGGGATATTGGCTTATTGTTAAGCCAAATTTTGAGCAATTGGATACACTGGAAG
CCCAGGAAATTGCTTTGAAAACAGAGTTTGAAAAAAAGCAACATCAGGCAGCAAATCTACAAGCCTATCGTAATCAGTTA
CAGTTAATGAATGAACGCTTTGGAACCATGCTAAAACAACTCCCGGCAAAAAATGAAATGCCTGGGCTTTTGGAAGAAAT
ATCTAAAACAGGGATCGCATCGGGTTTGAAATTTGAATTGTTTGCACCACAACCTGAAGTAGTGCATGATTTTTATGTGG
AGTTACCTATAAAAATTACGATTGTCGGATCCTATATGCAATTAGCAAGATTTTTAAGTCGTGTTGCTGAAATGAACAGA
ATCGTGACTTTGCATGAATTTAGTGTTGAGGGGGTATCCTCCGGGGATGGTAAAACGGTCTCTCAGGATGAATTGGTGAT
GGGTATCACTGCTAAAATATACAGATATCGGGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(49-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

97.487

100

0.975
  comO Acinetobacter baylyi ADP1

39.894

94.472

0.377
  pilO Acinetobacter baumannii D1279779

38.22

95.98

0.367

Multiple sequence alignment