Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CA934_RS05050 Genome accession   NZ_CP021259
Coordinates   1092748..1093296 (+) Length   182 a.a.
NCBI ID   WP_106224992.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087748..1098296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS05040 - 1090248..1091261 (-) 1014 WP_027221263.1 hypothetical protein -
  CA934_RS05045 pilM 1091680..1092744 (+) 1065 WP_027221264.1 pilus assembly protein PilM Machinery gene
  CA934_RS05050 pilN 1092748..1093296 (+) 549 WP_106224992.1 PilN domain-containing protein Machinery gene
  CA934_RS05055 pilO 1093310..1093909 (+) 600 WP_027221266.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA934_RS05060 pilP 1093906..1094490 (+) 585 WP_027221267.1 pilus assembly protein PilP Machinery gene
  CA934_RS05065 pilQ 1094494..1096590 (+) 2097 WP_027221268.1 type IV pilus secretin PilQ Machinery gene
  CA934_RS05070 aroK 1097033..1097560 (+) 528 WP_032828804.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21250.03 Da        Isoelectric Point: 10.1404

>NTDB_id=229164 CA934_RS05050 WP_106224992.1 1092748..1093296(+) (pilN) [Legionella pneumophila strain D-7708]
MTEINLLPWREQKREQEKKLFTTMLLIGIIVAAAIVFLMNSYVSHLISNQTQRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGIYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
IVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=229164 CA934_RS05050 WP_106224992.1 1092748..1093296(+) (pilN) [Legionella pneumophila strain D-7708]
ATGACTGAGATTAATTTATTACCATGGCGTGAGCAAAAACGGGAACAGGAAAAGAAATTATTCACGACCATGTTATTGAT
AGGGATTATCGTTGCTGCGGCAATTGTTTTTTTAATGAATTCTTATGTTTCCCATTTAATAAGTAATCAAACGCAACGGA
ACCAGATTTTACAGAAAGAAATTACAGCCTTAGATGAGCAAATCAAGGAGATCAAGGCATTAAAGCAAATCAGAGAAGGT
CTGATTTCGAGAATGTCTATCGTGCAGAATCTGCAATCAACAAGAACTTTAATGGTTCATTTATTTGATGAGTTAATTAA
AATTACTCCTCCAGGAATTTACATAACCAAGATGCAAAGAGAACATGATGTCGTAACACTCTGGGGGTATTCTGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCCAATGTCTGGATACAGAATCCCGTACTTACTGAAATTAAAAAA
ATTGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

97.802

100

0.978

Multiple sequence alignment