Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CAP31_RS12010 Genome accession   NZ_CP021138
Coordinates   2382512..2382985 (-) Length   157 a.a.
NCBI ID   WP_087447749.1    Uniprot ID   -
Organism   Sulfuriferula sp. AH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2377512..2387985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS15180 - 2378707..2379057 (-) 351 WP_255377108.1 cation transporting ATPase C-terminal domain-containing protein -
  CAP31_RS15085 - 2379051..2380325 (-) 1275 WP_255377109.1 HAD-IC family P-type ATPase -
  CAP31_RS15090 - 2380295..2381242 (-) 948 WP_223247276.1 HAD-IC family P-type ATPase -
  CAP31_RS15185 - 2381226..2381360 (-) 135 WP_255377110.1 hypothetical protein -
  CAP31_RS12000 (CAP31_11985) - 2381581..2381988 (+) 408 WP_087447748.1 truncated hemoglobin -
  CAP31_RS12005 (CAP31_11990) - 2382053..2382427 (+) 375 WP_223247277.1 hypothetical protein -
  CAP31_RS12010 (CAP31_11995) ssb 2382512..2382985 (-) 474 WP_087447749.1 single-stranded DNA-binding protein Machinery gene
  CAP31_RS12015 (CAP31_12000) - 2382969..2384345 (-) 1377 WP_087447750.1 MFS transporter -
  CAP31_RS12020 (CAP31_12005) uvrA 2384441..2387248 (+) 2808 WP_087447751.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17211.17 Da        Isoelectric Point: 5.3027

>NTDB_id=228512 CAP31_RS12010 WP_087447749.1 2382512..2382985(-) (ssb) [Sulfuriferula sp. AH1]
MASVNKVILIGNLGKDPEIRYMPSGDAMVNLTLATTDNWKDKNGEKQERTEWHRVVIFGKLAEIAGEYLKKGSQVYFEGS
LKTRKWTNKEGQDQYTTEIVADKMQMLGGRGGASSASMDSGSQYESRPSKPGAPAQNASQPKSGGNSFDDLDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=228512 CAP31_RS12010 WP_087447749.1 2382512..2382985(-) (ssb) [Sulfuriferula sp. AH1]
ATGGCATCAGTAAATAAAGTGATTTTGATAGGTAATCTCGGCAAGGATCCTGAAATACGCTACATGCCGAGCGGCGATGC
CATGGTGAACCTGACATTGGCGACTACCGATAACTGGAAAGATAAAAATGGCGAAAAGCAGGAGCGCACCGAATGGCATC
GAGTAGTCATATTCGGCAAGCTGGCTGAAATCGCCGGTGAATACCTGAAAAAAGGTTCGCAGGTATATTTCGAAGGCAGC
CTGAAAACACGCAAATGGACCAACAAGGAAGGTCAGGATCAGTACACTACCGAAATCGTCGCCGACAAGATGCAGATGCT
CGGCGGACGCGGCGGGGCTTCTTCCGCCAGCATGGACAGCGGCAGCCAGTATGAGAGCCGCCCCAGCAAGCCAGGTGCAC
CGGCACAGAATGCCAGCCAGCCTAAATCCGGCGGCAACAGTTTCGATGACCTGGACGATGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.371

100

0.605
  ssb Neisseria meningitidis MC58

47.977

100

0.529
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.529
  ssb Neisseria gonorrhoeae MS11

47.701

100

0.529
  ssb Latilactobacillus sakei subsp. sakei 23K

33.918

100

0.369

Multiple sequence alignment