Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B6D87_RS00985 Genome accession   NZ_CP021132
Coordinates   204183..205676 (-) Length   497 a.a.
NCBI ID   WP_086795630.1    Uniprot ID   A0A9Q6YEB6
Organism   Pseudomonas fragi strain NMC25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199183..210676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6D87_RS00970 (B6D87_00970) - 199907..201574 (+) 1668 WP_086795629.1 bifunctional diguanylate cyclase/phosphodiesterase -
  B6D87_RS00975 (B6D87_00975) - 201701..203101 (-) 1401 WP_086799514.1 NorM family multidrug efflux MATE transporter -
  B6D87_RS00980 (B6D87_00980) - 203254..204173 (+) 920 Protein_193 LysR substrate-binding domain-containing protein -
  B6D87_RS00985 (B6D87_00985) comM 204183..205676 (-) 1494 WP_086795630.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B6D87_RS00990 (B6D87_00990) - 205853..206131 (+) 279 WP_029611627.1 type II toxin-antitoxin system RelE/ParE family toxin -
  B6D87_RS00995 (B6D87_00995) - 206139..206443 (+) 305 Protein_196 HigA family addiction module antitoxin -
  B6D87_RS01000 (B6D87_01000) - 206456..206872 (-) 417 Protein_197 VOC family protein -
  B6D87_RS01005 (B6D87_01005) - 206919..207179 (-) 261 WP_016782665.1 accessory factor UbiK family protein -
  B6D87_RS01010 (B6D87_01010) glnK 207597..207935 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  B6D87_RS01015 (B6D87_01015) - 207969..209306 (+) 1338 WP_083369719.1 ammonium transporter -
  B6D87_RS01020 (B6D87_01020) sutA 209785..210111 (+) 327 WP_016782663.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53001.30 Da        Isoelectric Point: 8.2024

>NTDB_id=228458 B6D87_RS00985 WP_086795630.1 204183..205676(-) (comM) [Pseudomonas fragi strain NMC25]
MALAIVYSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSTLDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAVALEQVECLGELALSGTIRPVQGILPAALAARAAGRALVVPLANAEEACLACGLTVIAAEHL
LQVVAHFAGREVIAPYSPSGLLHLSKPYPDLSDVQGQLSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
HEALEVAAIQSVASHVPLNSWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARAKDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNPPLAS
DDTTAKAASLVAAARERQLQRQGCANAFLDLPGVRAQCRLSDGDNSWLEAACERMTLSLRAAHRLLKVARTLADLEQVQH
IERKHLAEALQYRPLSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=228458 B6D87_RS00985 WP_086795630.1 204183..205676(-) (comM) [Pseudomonas fragi strain NMC25]
ATGGCTCTGGCGATTGTTTACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCTGCGGTGACGGTGGAGGCGCATCTGGCCAA
TGGGTTGCCGGCGTTGACGCTGGTCGGTTTGCCTGAAACCGCAGTCAAGGAAAGTAAAGATCGGGTACGCAGTGCAATCA
TCAATTCCACCCTGGATTTCCCGGCCCGGCGGATCACCCTTAATCTCGCTCCCGCTGACCTGCCCAAGGACGGCGGGCGC
TTTGATCTGGCCATTGCCCTGGGCATTCTGGCGGCCAGCGGGCAACTGCCGGCAGTGGCGCTGGAGCAAGTGGAGTGTTT
GGGCGAACTGGCGCTATCGGGGACAATCAGGCCGGTGCAGGGCATATTGCCAGCCGCCCTGGCAGCTCGCGCCGCAGGTC
GGGCGCTGGTGGTGCCGCTGGCCAATGCCGAGGAAGCCTGCCTGGCCTGCGGGCTGACGGTCATCGCGGCCGAGCACTTG
CTGCAGGTGGTGGCCCATTTTGCAGGCCGGGAAGTGATTGCGCCCTATAGCCCCAGCGGCTTGCTGCATCTAAGCAAGCC
CTATCCCGACCTGAGCGATGTCCAGGGCCAGCTTTCGGCCAAGCGGGCGTTGCTGGTGGCCGCAGCCGGCAGTCACAACC
TGCTGTTTACCGGGCCGCCGGGCACAGGCAAAACCTTGCTGGCCAGTCGCCTGCCTGGCTTGTTGCCCCCCCTCAATGAA
CACGAGGCGCTGGAAGTGGCCGCCATTCAGTCGGTGGCCAGCCATGTGCCATTGAACAGCTGGCCTCAGCGACCGTTTCG
CCAACCCCATCATTCGGCCTCCGGCCCCGCGCTGGTGGGCGGCGGCTCCAAACCCCGGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGTTGTTTCTCGATGAACTCCCCGAGTTTGATCGCAAGGTGCTGGAAGTCTTGCGAGAGCCCATGGAAAGC
GGCTTTATTGTGATTGCCCGGGCCAAGGATCGCATGCGTTTTCCGGCGCGTTTCCAGCTGGTTGCGGCGATGAACCCCTG
TCCTTGTGGCTATCTCGGCGAACCCACAGGGCGCTGTCGCTGCACACCGGAGCAGATTCAGCGCTATCGCAACAAACTGT
CTGGCCCATTGCTCGATCGCATTGACCTGCACCTGACCGTGGCCCGCGAAACCACCACCCTCAACCCGCCACTGGCCTCA
GATGACACCACGGCCAAGGCGGCTTCGTTGGTAGCTGCGGCGCGAGAGCGGCAGCTGCAACGCCAGGGCTGTGCCAATGC
CTTTCTCGACCTGCCGGGGGTGCGTGCCCAGTGCCGCTTGAGTGATGGGGATAACAGCTGGCTGGAGGCTGCTTGCGAGC
GCATGACCCTGTCACTGCGGGCGGCACATCGATTGTTGAAAGTGGCAAGAACCCTGGCTGACCTTGAACAGGTACAACAC
ATAGAGCGCAAACATCTGGCAGAGGCGTTGCAGTATCGGCCGCTCAGTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.422

100

0.555
  comM Vibrio cholerae strain A1552

55.131

100

0.551
  comM Haemophilus influenzae Rd KW20

53.984

100

0.545
  comM Glaesserella parasuis strain SC1401

52.976

100

0.537
  comM Legionella pneumophila str. Paris

48.992

99.799

0.489
  comM Legionella pneumophila strain ERS1305867

48.992

99.799

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.423

100

0.457

Multiple sequence alignment