Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CAH07_RS08880 Genome accession   NZ_CP021123
Coordinates   1684334..1684765 (+) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1679334..1689765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS08855 (CAH07_08740) corA 1680575..1681528 (+) 954 WP_029317911.1 magnesium transporter CorA -
  CAH07_RS08865 (CAH07_08750) comGA 1681940..1683010 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  CAH07_RS08870 (CAH07_08755) comGB 1682997..1684034 (+) 1038 WP_101172386.1 comG operon protein ComGB Machinery gene
  CAH07_RS08875 (CAH07_08760) comGC 1684048..1684344 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  CAH07_RS08880 (CAH07_08765) comGD 1684334..1684765 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  CAH07_RS08885 (CAH07_08770) comGE 1684749..1685096 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  CAH07_RS08890 (CAH07_08775) comGF 1685122..1685505 (+) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  CAH07_RS08895 (CAH07_08780) comGG 1685506..1685880 (+) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  CAH07_RS08900 (CAH07_08785) spoIITA 1685951..1686130 (+) 180 WP_003230176.1 YqzE family protein -
  CAH07_RS08905 (CAH07_08790) yqzG 1686172..1686498 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  CAH07_RS08910 (CAH07_08795) tapA 1686770..1687531 (+) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  CAH07_RS08915 (CAH07_08800) sipW 1687515..1688087 (+) 573 WP_003246088.1 signal peptidase I SipW -
  CAH07_RS08920 (CAH07_08805) tasA 1688151..1688936 (+) 786 WP_015251717.1 biofilm matrix protein TasA -
  CAH07_RS08925 (CAH07_08810) sinR 1689029..1689364 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  CAH07_RS08930 (CAH07_08815) sinI 1689398..1689571 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=228389 CAH07_RS08880 WP_004398628.1 1684334..1684765(+) (comGD) [Bacillus subtilis strain SEM-9]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=228389 CAH07_RS08880 WP_004398628.1 1684334..1684765(+) (comGD) [Bacillus subtilis strain SEM-9]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment