Detailed information NTG0228392

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C4J65_RS13210
• Genome accession: NZ_CP026730
• Coordinates: 2869461..2870459 (-)
• Length: 332 a.a.
• NCBI ID: WP_115742596.1
• Uniprot ID: -
• Organism: Streptomyces sp. CB09001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2864461..2875459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J65_RS13190 (C4J65_13175)	-	2864719..2865480 (-)	762	WP_115742592.1	DeoR/GlpR family DNA-binding transcription regulator	-
C4J65_RS13195 (C4J65_13180)	-	2865721..2867238 (-)	1518	WP_115742593.1	MFS transporter	-
C4J65_RS13200 (C4J65_13185)	-	2867301..2868272 (+)	972	WP_115742594.1	YafY family protein	-
C4J65_RS13205 (C4J65_13190)	-	2868347..2869051 (-)	705	WP_115742595.1	TetR family transcriptional regulator	-
C4J65_RS13210 (C4J65_13195)	rpoS	2869461..2870459 (-)	999	WP_115742596.1	sigma-70 family RNA polymerase sigma factor	Regulator
C4J65_RS13215 (C4J65_13200)	-	2870674..2871189 (+)	516	WP_115742597.1	GNAT family N-acetyltransferase	-
C4J65_RS13220 (C4J65_13205)	-	2871186..2871947 (-)	762	WP_115746431.1	class III extradiol ring-cleavage dioxygenase	-
C4J65_RS13225 (C4J65_13210)	-	2872067..2872558 (+)	492	WP_011028826.1	MarR family transcriptional regulator	-
C4J65_RS13230 (C4J65_13215)	-	2872660..2874204 (-)	1545	WP_115742598.1	MFS transporter	-
C4J65_RS13235 (C4J65_13220)	-	2874346..2874999 (-)	654	WP_205351002.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37162.88 Da
• Isoelectric Point: 4.9068

>NTDB_id=228392 C4J65_RS13210 WP_115742596.1 2869461..2870459(-) (rpoS) [Streptomyces sp. CB09001]
MATRAVARRKSATGETSGPATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVVDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=228392 C4J65_RS13210 WP_115742596.1 2869461..2870459(-) (rpoS) [Streptomyces sp. CB09001]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCCCGGCAACCAGCGTCCGCGCGAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTCTTCGCGCGGCAGGTCCTCGAAGGGTACGAGGAGACCGGGGCGGAC
GCCACCCGTGAGGAGCTCCAGGCCCTGATCGACGAGGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCGGTCGCCCGCCGCTACCCGCGCAGCGGCCTGCCGCTCCTGGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGCACCATCCGGCTGCCCGTCCACCTCGTCGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGGGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCGACGCCGGAGC
GCGTCGTCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCGGCCGTTTCCCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.134	90.06	0.361