Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CAL15_RS14515 Genome accession   NZ_CP021111
Coordinates   3237473..3238978 (-) Length   501 a.a.
NCBI ID   WP_086079251.1    Uniprot ID   A0A1W6ZDU7
Organism   Bordetella genomosp. 13 strain AU7206     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3232473..3243978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL15_RS14495 (CAL15_14470) - 3233592..3234758 (-) 1167 WP_086079247.1 acyl-CoA dehydrogenase family protein -
  CAL15_RS14500 (CAL15_14475) - 3234759..3235985 (-) 1227 WP_086079248.1 CaiB/BaiF CoA transferase family protein -
  CAL15_RS14505 (CAL15_14480) - 3235985..3236956 (-) 972 WP_086079249.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  CAL15_RS14510 (CAL15_14485) - 3237014..3237406 (-) 393 WP_086079250.1 cupin domain-containing protein -
  CAL15_RS14515 (CAL15_14490) comM 3237473..3238978 (-) 1506 WP_086079251.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CAL15_RS14520 (CAL15_14495) - 3239205..3239474 (-) 270 WP_198299058.1 accessory factor UbiK family protein -
  CAL15_RS14525 (CAL15_14500) - 3240041..3240379 (+) 339 WP_029579579.1 P-II family nitrogen regulator -
  CAL15_RS14530 (CAL15_14505) amt 3240416..3241654 (+) 1239 WP_086079252.1 ammonium transporter -
  CAL15_RS14535 (CAL15_14510) - 3241857..3242756 (-) 900 WP_086079253.1 LysR substrate-binding domain-containing protein -
  CAL15_RS14540 (CAL15_14515) - 3242859..3243746 (+) 888 WP_086079254.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52760.16 Da        Isoelectric Point: 8.8995

>NTDB_id=228319 CAL15_RS14515 WP_086079251.1 3237473..3238978(-) (comM) [Bordetella genomosp. 13 strain AU7206]
MTLAVFASRALSGLDAPAVRVETHLGTGLPSFSVVGLPDVEVRESRERVRAALANSGYEFPPGRITVNLSPADLPKASAR
FDLPIALGLLLASGQLSLPADMPAHTLADVILAGELSLTGALVPVASPLPLALAVARERPGAVLVLPAGSAETAAWVPGL
RVLAARTLAEVAAHLAGTAPLPEARPAAWPAAAPPPCLSDVRGQPAARRALEVCAAGMHSLLMVGPPGAGKSMLAQRLPG
LLPPLRVTEALETAAIAALAGGAVPLGQPPLRAPHHTVSAVALVGGGGKPRPGEISLAHHGVLFLDELPEFGRRALESLR
EPLETGRVAISRALHQVEYPARFQLVAAMNPCPCGWRGHPTRPCRCSPEQVERYAGKVSGPLLDRIDVHLSIPPADLRWL
DEPPGEPSAAVRERVMRCRQRQLDRQGMPNAGLQGADLERYCPMPVAARNLLQQAIRKLDGSARALHRALRVARTLADLE
QADQIDARHVAEAVQYRRASV

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=228319 CAL15_RS14515 WP_086079251.1 3237473..3238978(-) (comM) [Bordetella genomosp. 13 strain AU7206]
ATGACCCTAGCCGTATTCGCCAGCCGCGCCTTGTCGGGGCTGGACGCGCCCGCCGTGCGGGTCGAAACCCATCTGGGCAC
CGGCCTGCCGTCGTTCAGCGTGGTGGGACTGCCCGACGTCGAAGTGCGCGAGAGTCGCGAACGCGTGCGCGCGGCGCTGG
CCAATAGCGGTTACGAGTTTCCGCCAGGCCGCATCACCGTCAACCTGTCGCCGGCCGACCTGCCCAAGGCGTCGGCGCGT
TTCGATCTGCCCATCGCGCTGGGACTGCTGCTGGCATCCGGACAGTTGAGCCTGCCGGCGGACATGCCCGCGCACACGTT
GGCCGACGTGATACTGGCGGGCGAGCTGTCACTGACTGGCGCGCTGGTGCCGGTGGCTTCGCCGCTGCCCTTGGCGCTGG
CCGTGGCGCGCGAGCGCCCCGGCGCGGTGCTGGTGCTGCCGGCGGGCAGCGCGGAGACGGCGGCATGGGTGCCGGGCCTG
CGCGTGCTGGCCGCGCGCACGCTGGCCGAGGTGGCCGCGCACCTGGCAGGCACGGCGCCGCTGCCCGAGGCGCGGCCCGC
CGCCTGGCCCGCCGCGGCGCCGCCGCCGTGCCTGTCCGACGTGCGTGGGCAGCCGGCCGCGCGGCGCGCGCTGGAAGTGT
GCGCCGCCGGCATGCACAGCCTGCTGATGGTGGGGCCGCCCGGCGCGGGCAAGAGCATGCTGGCGCAACGGCTGCCCGGC
CTGTTGCCGCCGCTGCGGGTGACCGAGGCGCTGGAGACGGCGGCCATCGCGGCGCTGGCCGGGGGCGCCGTGCCGCTGGG
CCAGCCTCCGTTGCGCGCGCCGCATCACACCGTGTCTGCCGTGGCGCTGGTGGGCGGCGGCGGCAAGCCGCGGCCGGGCG
AGATCAGCCTGGCGCACCATGGGGTGCTGTTCCTGGACGAACTTCCCGAGTTCGGCCGGCGGGCGCTGGAATCGCTGCGC
GAGCCGCTGGAGACAGGCAGGGTGGCCATCTCCCGGGCGTTGCACCAGGTCGAGTATCCCGCTCGGTTCCAACTGGTGGC
GGCCATGAATCCCTGCCCGTGCGGCTGGCGCGGCCATCCCACGCGTCCGTGCCGCTGCAGTCCCGAGCAGGTGGAGCGCT
ACGCCGGCAAGGTCTCGGGACCGCTGCTGGACCGCATCGACGTGCACCTTTCCATTCCACCGGCCGACCTGCGCTGGCTG
GATGAACCGCCTGGCGAGCCTTCGGCGGCGGTGCGCGAACGCGTCATGCGATGCCGGCAGCGTCAGCTCGACCGGCAGGG
CATGCCCAATGCCGGCCTGCAAGGCGCAGATCTGGAACGGTACTGTCCCATGCCCGTCGCCGCGCGCAATCTGCTGCAGC
AGGCCATCCGCAAATTGGACGGGTCGGCACGCGCTTTGCACCGCGCGCTGCGGGTGGCCCGCACGCTGGCCGATCTCGAG
CAGGCCGACCAGATCGACGCCCGGCACGTCGCCGAAGCCGTCCAGTACCGCCGCGCATCCGTATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6ZDU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.119

100

0.485
  comM Vibrio campbellii strain DS40M4

47.117

100

0.473
  comM Haemophilus influenzae Rd KW20

45.562

100

0.461
  comM Legionella pneumophila str. Paris

44.118

100

0.449
  comM Legionella pneumophila strain ERS1305867

44.118

100

0.449
  comM Glaesserella parasuis strain SC1401

43.898

100

0.445
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.359

100

0.443

Multiple sequence alignment