Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CAL14_RS12925 Genome accession   NZ_CP021110
Coordinates   2820753..2822270 (-) Length   505 a.a.
NCBI ID   WP_086057844.1    Uniprot ID   -
Organism   Bordetella genomosp. 9 strain AU14267     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2815753..2827270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL14_RS12900 (CAL14_12915) - 2815790..2816119 (-) 330 WP_086057840.1 integration host factor subunit alpha -
  CAL14_RS12905 (CAL14_12920) pheT 2816145..2818562 (-) 2418 WP_086057841.1 phenylalanine--tRNA ligase subunit beta -
  CAL14_RS12910 (CAL14_12925) pheS 2818576..2819598 (-) 1023 WP_086057842.1 phenylalanine--tRNA ligase subunit alpha -
  CAL14_RS12915 (CAL14_12930) rplT 2819704..2820063 (-) 360 WP_086057843.1 50S ribosomal protein L20 -
  CAL14_RS12920 (CAL14_12935) rpmI 2820083..2820280 (-) 198 WP_006387997.1 50S ribosomal protein L35 -
  CAL14_RS12925 (CAL14_12940) comM 2820753..2822270 (-) 1518 WP_086057844.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CAL14_RS12930 (CAL14_12945) - 2822347..2822634 (-) 288 WP_086057845.1 accessory factor UbiK family protein -
  CAL14_RS12935 (CAL14_12950) - 2822905..2823243 (+) 339 WP_086057846.1 P-II family nitrogen regulator -
  CAL14_RS12940 (CAL14_12955) amt 2823277..2824515 (+) 1239 WP_086057847.1 ammonium transporter -
  CAL14_RS12945 (CAL14_12960) ptsP 2824687..2826342 (-) 1656 WP_232462622.1 phosphoenolpyruvate--protein phosphotransferase -
  CAL14_RS12950 (CAL14_12965) - 2826500..2826769 (-) 270 WP_086057848.1 HPr family phosphocarrier protein -
  CAL14_RS12955 (CAL14_12970) - 2826842..2827240 (-) 399 WP_086057849.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 52735.04 Da        Isoelectric Point: 8.4487

>NTDB_id=228299 CAL14_RS12925 WP_086057844.1 2820753..2822270(-) (comM) [Bordetella genomosp. 9 strain AU14267]
MTLAVLSSRALVGLSAAPVRVETHLAAGLPSFTVVGLPDAEVRESRERVRAAIQSSGFEFPAGRITVNLAPADLRKESAR
FDLPIALGLLLASGQVAMPELNRGADGSSLARLVLAGELSLTGVLVPVAAPLAIALGVARDQPDATLILPAVSAAQAAHV
PDLCVLAARTLAEVVAHLCGSAFLPRAEPAAWPAAPPTPCLSEVRGQPAARRALELAAAGGHSMLMIGPPGAGKSMLAHR
LPGLLPPLSRLDALEVAAIAGLAPGDASFSLQPPFRAPHHGATAAALVGGGGRPRPGEISLAHHGVLFLDELPEFDRRAL
EGLREPLETGRVAIARAACTVQYPARFQLVAAMNPCPCGWLGHPRMACRCTPDQAARYRGRVSGPLLDRIDVGVTLPPPD
PDWMDAPPGEPSACVRDRVVACRTRQHARQGKLNAWLDAREMEAHCPLGPDARALLRRAIGALNASGRAVHRILRVARTA
ADLEGQQTIAAPHVAEGVQYRQALT

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=228299 CAL14_RS12925 WP_086057844.1 2820753..2822270(-) (comM) [Bordetella genomosp. 9 strain AU14267]
ATGACTCTCGCCGTGCTGAGCAGCCGGGCCCTGGTCGGATTGAGCGCCGCGCCGGTGCGCGTCGAAACCCATTTGGCGGC
CGGATTGCCCTCGTTCACCGTGGTCGGCCTGCCCGATGCGGAAGTGCGCGAAAGCCGCGAACGCGTTCGCGCAGCGATCC
AGAGCAGCGGGTTCGAATTTCCCGCCGGGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCGCAAGGAGTCCGCGCGG
TTCGACCTGCCCATCGCACTTGGCCTGCTGCTGGCTTCCGGCCAGGTCGCGATGCCCGAACTCAACCGTGGCGCGGACGG
CTCCAGCCTTGCGAGGCTGGTGCTCGCCGGCGAATTGTCCTTGACCGGCGTGCTGGTTCCGGTCGCCGCGCCTCTGGCCA
TCGCGTTGGGAGTCGCCCGCGACCAGCCCGATGCCACCCTGATCCTGCCGGCCGTCAGCGCGGCGCAGGCGGCACATGTG
CCGGACCTGTGCGTGCTCGCCGCGCGGACGCTGGCGGAAGTCGTGGCGCATCTGTGCGGAAGCGCCTTTTTGCCACGCGC
AGAACCTGCCGCCTGGCCGGCGGCGCCGCCAACGCCCTGTCTGTCGGAGGTTCGCGGGCAGCCCGCTGCCCGGCGGGCGC
TCGAACTGGCTGCCGCGGGTGGCCATAGCATGTTGATGATCGGCCCCCCGGGGGCGGGAAAAAGCATGCTGGCGCACCGG
CTGCCGGGATTGCTGCCCCCGCTGTCGCGGCTGGACGCCTTGGAAGTCGCCGCCATCGCGGGGCTCGCGCCCGGCGATGC
GTCGTTCAGTCTGCAGCCGCCATTTCGAGCGCCGCACCATGGGGCGACGGCGGCTGCGCTGGTCGGCGGCGGCGGCCGCC
CTCGCCCCGGCGAGATCAGTCTGGCGCATCACGGCGTCCTGTTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGCGCTG
GAGGGCTTGCGCGAGCCTTTGGAAACCGGGCGCGTTGCCATCGCGCGCGCCGCCTGCACGGTGCAGTACCCGGCGCGCTT
CCAGCTGGTCGCCGCCATGAATCCGTGCCCCTGCGGCTGGCTGGGCCACCCGCGCATGGCCTGCCGATGCACGCCGGACC
AGGCCGCGCGCTACCGCGGCCGCGTTTCCGGCCCGCTGCTGGATCGCATCGATGTGGGCGTCACGCTGCCGCCGCCCGAT
CCCGACTGGATGGATGCGCCGCCGGGGGAGCCGTCGGCTTGCGTGCGGGACAGGGTGGTGGCCTGCCGGACGCGCCAGCA
CGCCCGGCAGGGCAAGCTCAACGCCTGGCTGGATGCCCGCGAGATGGAGGCGCACTGTCCTTTGGGTCCGGACGCGCGGG
CCTTGCTGCGCCGGGCCATCGGCGCCCTGAACGCGTCCGGGCGCGCGGTCCATCGCATCCTGAGGGTGGCGCGCACGGCA
GCGGACCTGGAAGGGCAGCAGACGATCGCGGCGCCGCACGTGGCGGAGGGGGTGCAGTATCGACAGGCATTGACCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-151)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.425

100

0.487
  comM Vibrio campbellii strain DS40M4

47.628

100

0.477
  comM Haemophilus influenzae Rd KW20

46.471

100

0.469
  comM Legionella pneumophila str. Paris

44.701

100

0.459
  comM Legionella pneumophila strain ERS1305867

44.701

100

0.459
  comM Glaesserella parasuis strain SC1401

44.314

100

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.44

Multiple sequence alignment