Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CAL13_RS13430 Genome accession   NZ_CP021109
Coordinates   2928614..2930131 (-) Length   505 a.a.
NCBI ID   WP_086072661.1    Uniprot ID   A0A1W6Z170
Organism   Bordetella genomosp. 9 strain AU17164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2923614..2935131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL13_RS13405 (CAL13_13390) - 2923675..2924004 (-) 330 WP_086057840.1 integration host factor subunit alpha -
  CAL13_RS13410 (CAL13_13395) pheT 2924030..2926447 (-) 2418 WP_086072660.1 phenylalanine--tRNA ligase subunit beta -
  CAL13_RS13415 (CAL13_13400) pheS 2926461..2927483 (-) 1023 WP_086057842.1 phenylalanine--tRNA ligase subunit alpha -
  CAL13_RS13420 (CAL13_13405) rplT 2927589..2927948 (-) 360 WP_086057843.1 50S ribosomal protein L20 -
  CAL13_RS13425 (CAL13_13410) rpmI 2927968..2928165 (-) 198 WP_006387997.1 50S ribosomal protein L35 -
  CAL13_RS13430 (CAL13_13415) comM 2928614..2930131 (-) 1518 WP_086072661.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CAL13_RS13435 (CAL13_13420) - 2930208..2930495 (-) 288 WP_086057845.1 accessory factor UbiK family protein -
  CAL13_RS13440 (CAL13_13425) - 2930766..2931104 (+) 339 WP_086057846.1 P-II family nitrogen regulator -
  CAL13_RS13445 (CAL13_13430) amt 2931138..2932376 (+) 1239 WP_086057847.1 ammonium transporter -
  CAL13_RS13450 (CAL13_13435) ptsP 2932548..2934203 (-) 1656 WP_232462622.1 phosphoenolpyruvate--protein phosphotransferase -
  CAL13_RS13455 (CAL13_13440) - 2934361..2934630 (-) 270 WP_086057848.1 HPr family phosphocarrier protein -
  CAL13_RS13460 (CAL13_13445) - 2934703..2935101 (-) 399 WP_086057849.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 52749.07 Da        Isoelectric Point: 8.4487

>NTDB_id=228284 CAL13_RS13430 WP_086072661.1 2928614..2930131(-) (comM) [Bordetella genomosp. 9 strain AU17164]
MTLAVLSSRALVGLSAAPVRVETHLAAGLPSFTVVGLPDAEVRESRERVRAAIQSSGFEFPAGRITVNLAPADLRKESAR
FDLPIALGLLLASGQVAMPELNRGADGSSLARLVLAGELSLTGVLVPVAAPLAIALGVARDQPDATLILPAVSAAQAAHV
PDLCVLAARTLAEVVAHLCGSAFLPRAEPAAWPAAPPTPCLSEVRGQPAARRALELAAAGGHSMLMIGPPGAGKSMLAHR
LPGLLPPLSRLDALEVAAIAGLAPGDASFSLQPPFRAPHHGATAAALVGGGGRPRPGEISLAHHGVLFLDELPEFDRRAL
EGLREPLETGRVAIARAACTVQYPARFQLVAAMNPCPCGWLGHPRMACRCTPDQAARYRGRVSGPLLDRIDLGVTLPPPD
PDWMDAPPGEPSACVRDRVVACRTRQHARQGKLNAWLDAREMEAHCPLGPDARALLRRAIGALNASGRAVHRILRVARTA
ADLEGQQTIAAPHVAEGVQYRQALT

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=228284 CAL13_RS13430 WP_086072661.1 2928614..2930131(-) (comM) [Bordetella genomosp. 9 strain AU17164]
ATGACTCTCGCCGTGCTGAGCAGCCGGGCCCTCGTCGGATTGAGCGCCGCGCCGGTGCGCGTCGAAACCCATTTGGCGGC
CGGATTGCCCTCGTTCACCGTGGTCGGCCTGCCCGATGCGGAAGTGCGCGAAAGCCGCGAACGCGTTCGCGCGGCGATCC
AGAGCAGCGGGTTCGAATTTCCCGCCGGGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCGCAAGGAGTCCGCGCGG
TTCGACCTGCCCATCGCACTTGGCCTGCTGCTGGCTTCCGGCCAGGTCGCGATGCCCGAACTCAACCGTGGCGCGGACGG
CTCCAGCCTTGCGAGGTTGGTGCTCGCCGGCGAATTGTCCTTGACCGGCGTGCTGGTTCCGGTCGCCGCGCCTCTGGCCA
TCGCGTTGGGAGTCGCCCGCGACCAGCCCGATGCCACCCTGATCCTGCCGGCCGTCAGCGCGGCGCAGGCGGCACATGTG
CCGGACCTGTGCGTGCTCGCCGCCCGGACGCTGGCGGAAGTCGTGGCGCATCTGTGCGGAAGCGCCTTTTTGCCACGCGC
AGAACCTGCCGCCTGGCCGGCGGCGCCGCCAACGCCCTGTCTGTCGGAGGTTCGCGGGCAGCCCGCTGCCCGGCGGGCGC
TCGAACTGGCTGCCGCGGGCGGCCACAGCATGTTGATGATCGGCCCCCCGGGGGCGGGAAAAAGCATGCTGGCGCACCGG
CTGCCGGGATTGCTGCCCCCGCTGTCGCGGCTGGACGCCTTGGAAGTCGCCGCCATCGCGGGGCTCGCGCCCGGCGATGC
GTCCTTCAGTCTGCAGCCGCCATTTCGAGCGCCGCACCATGGGGCGACGGCGGCTGCGCTGGTCGGCGGCGGCGGCCGCC
CTCGCCCCGGCGAGATCAGTCTGGCGCATCACGGCGTCCTGTTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGCGCTG
GAGGGCTTGCGCGAGCCCCTGGAAACCGGGCGCGTTGCCATCGCGCGCGCCGCCTGCACGGTGCAGTACCCGGCGCGCTT
CCAGCTGGTCGCCGCCATGAATCCGTGCCCCTGCGGCTGGCTGGGCCACCCGCGCATGGCCTGCCGATGCACGCCGGACC
AGGCCGCGCGCTACCGCGGCCGCGTTTCCGGCCCGCTGCTGGATCGCATCGATCTGGGCGTCACGTTGCCGCCGCCCGAT
CCCGACTGGATGGATGCGCCGCCGGGGGAGCCGTCGGCTTGCGTGCGCGACAGGGTGGTGGCCTGCCGGACGCGCCAGCA
CGCCCGGCAGGGCAAGCTCAACGCCTGGCTGGATGCCCGCGAGATGGAGGCGCACTGTCCTTTGGGTCCGGACGCGCGGG
CCTTGCTGCGCCGGGCCATCGGCGCCCTGAACGCCTCCGGGCGCGCGGTCCATCGCATCCTGCGGGTGGCGCGCACAGCA
GCGGACCTGGAAGGGCAGCAGACGATCGCGGCGCCGCACGTGGCGGAGGGGGTGCAGTATCGACAGGCATTGACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-151)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6Z170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.425

100

0.487
  comM Vibrio campbellii strain DS40M4

47.628

100

0.477
  comM Haemophilus influenzae Rd KW20

46.667

100

0.471
  comM Legionella pneumophila str. Paris

44.701

100

0.459
  comM Legionella pneumophila strain ERS1305867

44.701

100

0.459
  comM Glaesserella parasuis strain SC1401

44.51

100

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.44

Multiple sequence alignment