Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CAL11_RS14180 Genome accession   NZ_CP021107
Coordinates   3016892..3018394 (-) Length   500 a.a.
NCBI ID   WP_086093293.1    Uniprot ID   -
Organism   Bordetella genomosp. 6 strain AU22978     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3011892..3023394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL11_RS14155 (CAL11_14155) - 3012147..3012488 (-) 342 WP_080699790.1 integration host factor subunit alpha -
  CAL11_RS14160 (CAL11_14160) pheT 3012494..3014911 (-) 2418 WP_086093292.1 phenylalanine--tRNA ligase subunit beta -
  CAL11_RS14165 (CAL11_14165) pheS 3014924..3015946 (-) 1023 WP_068926633.1 phenylalanine--tRNA ligase subunit alpha -
  CAL11_RS14170 (CAL11_14170) rplT 3016021..3016380 (-) 360 WP_003812832.1 50S ribosomal protein L20 -
  CAL11_RS14175 (CAL11_14175) rpmI 3016396..3016593 (-) 198 WP_003812834.1 50S ribosomal protein L35 -
  CAL11_RS14180 (CAL11_14180) comM 3016892..3018394 (-) 1503 WP_086093293.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CAL11_RS14185 (CAL11_14185) - 3018501..3018767 (-) 267 WP_010931105.1 accessory factor UbiK family protein -
  CAL11_RS14190 (CAL11_14190) - 3019475..3019813 (+) 339 WP_003812839.1 P-II family nitrogen regulator -
  CAL11_RS14195 (CAL11_14195) amt 3019839..3021077 (+) 1239 WP_086093294.1 ammonium transporter -
  CAL11_RS14200 (CAL11_14200) - 3021153..3021755 (-) 603 WP_086093295.1 TetR/AcrR family transcriptional regulator -
  CAL11_RS14205 (CAL11_14205) - 3021852..3023141 (+) 1290 WP_086093296.1 MFS transporter -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52130.15 Da        Isoelectric Point: 8.9707

>NTDB_id=228260 CAL11_RS14180 WP_086093293.1 3016892..3018394(-) (comM) [Bordetella genomosp. 6 strain AU22978]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDSVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRAWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPSL
LPPLEQGQALEVAAIAGAVGAPEVLRGQPPFRAPHHSASSAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVIISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVVRCRQRQLARQGCLNARLSGPALDANCGLGAAARALLQQAMRRLGGSARAAHRALRVARTVADLA
GEREIGAAHIAEAVQYRRPV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=228260 CAL11_RS14180 WP_086093293.1 3016892..3018394(-) (comM) [Bordetella genomosp. 6 strain AU22978]
ATGACCCTGGCCGTATTGGCCAGCCGGGCGATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTGGAAACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGCCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCGATCC
AGAACAGCGGTTTCGATTTCCCGCCCGGCCGCATTACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGACAGCGTGTGGGCGGCCGAGCTATCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TCGCGCGCGAACAGCCGGGCGCGACCCTGGTGCTGCCGGCCGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCCGCGCATACGCTGGGCGAAGCCGCGGCGTACCTGGCCGGACATGCCGAACTGGCGCCGGCCGAGCGCCGCGC
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTACGGGGCCAACCGGCTGCCCGGCGCGCTCTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCCTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCAAGCCTG
CTGCCGCCGCTGGAGCAGGGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGTCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCCCATCATTCCGCCTCGTCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCACGCCCGGGCG
AGATCAGCCTGGCGCATCACGGCGTGCTCTTCCTGGACGAACTGCCCGAGTTCGAGCGCCGCGCGCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCATCATTTCCCGGGCGCTGCACAGCGTCGAGTATCCCGCCGTATTCCAGCTGGTGGC
GGCCATGAACCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCGTGCCGGTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCGGGGCCGCTGGTCGACCGCATCGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAGCCGCCCGGCGAGCCGTCCCTTCCGGTGCGCGAGCGGGTGGTGCGCTGCCGCCAGCGGCAACTGGCTCGCCAGGG
TTGCCTGAACGCCAGGCTGTCCGGCCCCGCGCTCGATGCGAACTGCGGCCTGGGCGCCGCGGCCCGCGCGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGTGCCGCCCATCGCGCGCTCAGAGTGGCGCGCACCGTGGCCGACCTCGCC
GGCGAGCGCGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGGCGTCCGGTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.509

100

0.488
  comM Vibrio campbellii strain DS40M4

48.31

100

0.486
  comM Haemophilus influenzae Rd KW20

45.957

100

0.466
  comM Legionella pneumophila str. Paris

45.117

100

0.462
  comM Legionella pneumophila strain ERS1305867

45.117

100

0.462
  comM Glaesserella parasuis strain SC1401

45.472

100

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.353

100

0.432

Multiple sequence alignment