Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B6N60_RS07285 Genome accession   NZ_CP021056
Coordinates   1754706..1755071 (-) Length   121 a.a.
NCBI ID   WP_190607035.1    Uniprot ID   A0A975Y487
Organism   Richelia sinica FACHB-800 strain FACHB 800     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1749706..1760071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6N60_RS07275 (B6N60_01606) - 1751275..1754151 (-) 2877 WP_190607039.1 methyl-accepting chemotaxis protein -
  B6N60_RS07280 (B6N60_01607) - 1754168..1754692 (-) 525 WP_190607037.1 chemotaxis protein CheW -
  B6N60_RS07285 (B6N60_01608) pilH 1754706..1755071 (-) 366 WP_190607035.1 response regulator transcription factor Machinery gene
  B6N60_RS07290 (B6N60_01609) - 1755248..1756459 (-) 1212 WP_190607033.1 response regulator -
  B6N60_RS07295 (B6N60_01610) hmpF 1756956..1758710 (+) 1755 WP_190607031.1 pilus motility taxis protein HmpF -
  B6N60_RS07300 (B6N60_01611) ftsE 1758854..1759600 (-) 747 WP_190607029.1 cell division ATP-binding protein FtsE -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13348.51 Da        Isoelectric Point: 5.1746

>NTDB_id=227965 B6N60_RS07285 WP_190607035.1 1754706..1755071(-) (pilH) [Richelia sinica FACHB-800 strain FACHB 800]
MSTVLIVEDSLAQREMITDLLKASGLKVTHAGDGVEALEAIQQAPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=227965 B6N60_RS07285 WP_190607035.1 1754706..1755071(-) (pilH) [Richelia sinica FACHB-800 strain FACHB 800]
ATGAGTACCGTTTTGATTGTCGAAGACAGTCTGGCACAAAGGGAGATGATCACAGACCTCCTCAAGGCAAGCGGCTTAAA
AGTCACCCATGCTGGTGATGGAGTCGAAGCTTTGGAAGCCATTCAGCAAGCCCCTCCTGATTTAGTAGTTTTAGATATAG
TTATGCCTCGAATGAATGGCTATGAACTGTGCCGCAGACTCAAATCTGATCCCAAAACCCAAAATGTCCCTGTAGTCATG
TGTTCTTCCAAAGGAGAAGAATTTGACCGCTACTGGGGGATGAAACAAGGGGCTGATGCTTACATTGCCAAACCGTTTCA
ACCGACTGAGTTGGTAGGAACCGTCAAACAACTGTTGCGTGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372

Multiple sequence alignment