Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BL14DL4_RS12900 Genome accession   NZ_CP026673
Coordinates   2430927..2431439 (-) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus licheniformis strain 14ADL4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2425927..2436439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL14DL4_RS22910 - 2426316..2426447 (-) 132 WP_229098623.1 hypothetical protein -
  BL14DL4_RS12875 (BL14DL4_02574) - 2426614..2427096 (+) 483 WP_003178010.1 spore coat protein -
  BL14DL4_RS12880 (BL14DL4_02575) - 2427139..2427558 (-) 420 WP_003178013.1 universal stress protein -
  BL14DL4_RS12885 (BL14DL4_02576) - 2427576..2429041 (-) 1466 Protein_2547 SulP family inorganic anion transporter -
  BL14DL4_RS12890 (BL14DL4_02577) - 2429257..2430558 (+) 1302 WP_025807556.1 MFS transporter -
  BL14DL4_RS12895 (BL14DL4_02578) rpsR 2430636..2430875 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  BL14DL4_RS12900 (BL14DL4_02579) ssbA 2430927..2431439 (-) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  BL14DL4_RS12905 (BL14DL4_02580) rpsF 2431486..2431773 (-) 288 WP_003178026.1 30S ribosomal protein S6 -
  BL14DL4_RS12910 (BL14DL4_02581) ychF 2431887..2432987 (-) 1101 WP_003178027.1 redox-regulated ATPase YchF -
  BL14DL4_RS12920 (BL14DL4_02582) - 2433166..2433372 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  BL14DL4_RS12925 (BL14DL4_02583) - 2433460..2434473 (-) 1014 WP_003178030.1 hypothetical protein -
  BL14DL4_RS12930 (BL14DL4_02584) yyaC 2434777..2435394 (+) 618 WP_003178032.1 spore protease YyaC -
  BL14DL4_RS12935 (BL14DL4_02585) spo0J 2435431..2436279 (-) 849 WP_003178034.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=227959 BL14DL4_RS12900 WP_003178024.1 2430927..2431439(-) (ssbA) [Bacillus licheniformis strain 14ADL4]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=227959 BL14DL4_RS12900 WP_003178024.1 2430927..2431439(-) (ssbA) [Bacillus licheniformis strain 14ADL4]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAAAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAATGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382